Variant report
| Variant | rs7744166 |
|---|---|
| Chromosome Location | chr6:145554027-145554028 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:145547168..145549367-chr6:145552158..145554924,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10080573 | 0.92[ASN][1000 genomes] |
| rs11155407 | 0.88[ASN][1000 genomes] |
| rs11966141 | 0.90[ASN][1000 genomes] |
| rs12192050 | 0.99[ASN][1000 genomes] |
| rs12197362 | 0.86[ASN][1000 genomes] |
| rs12198549 | 0.88[ASN][1000 genomes] |
| rs12212061 | 0.88[ASN][1000 genomes] |
| rs1321527 | 0.92[EUR][1000 genomes] |
| rs1474614 | 0.90[ASN][1000 genomes] |
| rs1546864 | 0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1546865 | 0.92[ASN][1000 genomes] |
| rs1546866 | 0.92[ASN][1000 genomes] |
| rs17074868 | 0.88[ASN][1000 genomes] |
| rs1884955 | 0.88[ASN][1000 genomes] |
| rs2328651 | 0.80[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2876615 | 0.96[ASN][1000 genomes] |
| rs4895668 | 0.92[EUR][1000 genomes] |
| rs4896789 | 0.92[EUR][1000 genomes] |
| rs491131 | 0.88[ASN][1000 genomes] |
| rs507942 | 0.85[ASN][1000 genomes] |
| rs6899332 | 0.89[ASN][1000 genomes] |
| rs6917361 | 0.88[ASN][1000 genomes] |
| rs6917689 | 0.90[ASN][1000 genomes] |
| rs6919820 | 0.92[EUR][1000 genomes] |
| rs6924190 | 0.90[ASN][1000 genomes] |
| rs6932885 | 0.81[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6933246 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6942333 | 0.90[ASN][1000 genomes] |
| rs715030 | 0.80[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs715031 | 0.81[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7755038 | 0.92[ASN][1000 genomes] |
| rs9484958 | 0.81[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9484959 | 0.81[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9484961 | 0.81[AMR][1000 genomes];0.99[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1016747 | chr6:144917411-145599874 | Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv1022965 | chr6:145374851-145635385 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv830834 | chr6:145392073-145556294 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv886745 | chr6:145494486-145554124 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:145553600-145557600 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
