Variant report

Variant	rs6942333
Chromosome Location	chr6:145561870-145561871
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10080573	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10747272	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11155407	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11966141	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12192050	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12197362	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12198531	0.81[AFR][1000 genomes]
rs12198549	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12212061	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1321528	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1474614	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1546864	0.97[ASN][1000 genomes]
rs1546865	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1546866	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17074868	0.82[ASN][1000 genomes]
rs1884955	0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2328651	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2328652	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2876615	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs491131	0.82[ASN][1000 genomes]
rs491794	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs507942	0.88[ASN][1000 genomes]
rs513966	0.85[AFR][1000 genomes]
rs546717	0.83[AFR][1000 genomes]
rs553160	0.85[AFR][1000 genomes]
rs562811	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6899332	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6917361	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6917689	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6924190	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6932885	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6933246	0.90[ASN][1000 genomes]
rs715030	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs715031	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs737436	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7744166	0.90[ASN][1000 genomes]
rs7755038	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9484958	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9484959	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9484961	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1022965	chr6:145374851-145635385	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145560400-145565800	Weak transcription	Fetal Brain Male	brain
2	chr6:145561600-145566200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:145561800-145562800	Enhancers	HepG2	liver
4	chr6:145561800-145563200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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