Variant report

Variant	rs10752351
Chromosome Location	chr10:6588017-6588018
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10752356	1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10752357	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10796257	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10796268	1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10906828	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11259486	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1327245	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1327246	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1327247	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1541032	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1887325	0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1983910	0.95[AMR][1000 genomes]
rs1998939	1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1998940	1.00[MEX][hapmap];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2011261	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4748138	0.83[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4750596	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6602825	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7069738	0.86[AMR][1000 genomes]
rs7916556	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7916931	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs943446	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs943448	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9645607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv1047309	chr10:6495583-6714060	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv549912	chr10:6566975-6629225	Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10752351	STAT1	trans	brain	seeQTL

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6571400-6592200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:6585800-6588600	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr10:6586000-6588400	Enhancers	Primary T cells fromperipheralblood	blood
4	chr10:6586000-6588400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:6586000-6588600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr10:6586000-6588600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr10:6586000-6588600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr10:6586200-6588400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr10:6586200-6588400	Enhancers	Fetal Thymus	thymus
10	chr10:6586200-6588600	Enhancers	Primary T cells from cord blood	blood
11	chr10:6586200-6588600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr10:6586200-6589200	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr10:6586400-6588400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr10:6586400-6588600	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr10:6586400-6588600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr10:6586400-6588600	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr10:6586400-6591000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr10:6586600-6588400	Enhancers	Thymus	Thymus
19	chr10:6587600-6588600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr10:6587600-6589200	Weak transcription	Pancreas	Pancrea
21	chr10:6587800-6588600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr10:6587800-6588600	Enhancers	Dnd41	blood
23	chr10:6587800-6603600	Weak transcription	Primary hematopoietic stem cells	blood
24	chr10:6587800-6604200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr10:6588000-6596000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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