Variant report

Variant	rs7916556
Chromosome Location	chr10:6585414-6585415
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6512429..6514623-chr10:6584225..6586145,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10752351	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10752356	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10752357	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10796257	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10796268	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10906828	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11259486	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1327245	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1327246	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1327247	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1541032	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1887325	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1983910	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1998939	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1998940	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2011261	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4748138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4750596	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6602825	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7069738	0.86[AMR][1000 genomes]
rs7916931	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs943446	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs943448	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9645607	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv1047309	chr10:6495583-6714060	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv549912	chr10:6566975-6629225	Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6571400-6592200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:6583400-6587400	Weak transcription	Psoas Muscle	Psoas
3	chr10:6584000-6586400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
4	chr10:6584200-6585800	Enhancers	Duodenum Mucosa	Duodenum
5	chr10:6584400-6585600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
6	chr10:6584400-6586000	Enhancers	Brain Hippocampus Middle	brain
7	chr10:6584400-6586200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
8	chr10:6584400-6586600	Flanking Active TSS	Dnd41	blood
9	chr10:6584600-6586000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr10:6584600-6586000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
11	chr10:6584600-6586000	Flanking Active TSS	Thymus	Thymus
12	chr10:6584600-6586200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
13	chr10:6584600-6586400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr10:6584600-6586400	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr10:6584800-6585600	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
16	chr10:6584800-6585800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
17	chr10:6584800-6586000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr10:6584800-6586000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
19	chr10:6584800-6586000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr10:6584800-6586000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr10:6584800-6586200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
22	chr10:6584800-6586200	Flanking Active TSS	Fetal Thymus	thymus
23	chr10:6584800-6586400	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr10:6585000-6585600	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
25	chr10:6585000-6585600	Active TSS	Primary B cells from cord blood	blood
26	chr10:6585000-6585600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr10:6585000-6585600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
28	chr10:6585000-6585600	Active TSS	Pancreatic Islets	Pancreatic Islet
29	chr10:6585000-6585800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr10:6585000-6585800	Enhancers	H9 Cell Line	embryonic stem cell
31	chr10:6585000-6585800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
32	chr10:6585000-6585800	Enhancers	Primary B cells from peripheral blood	blood
33	chr10:6585000-6585800	Enhancers	Lung	lung
34	chr10:6585000-6585800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
35	chr10:6585000-6586000	Enhancers	H1 Cell Line	embryonic stem cell
36	chr10:6585000-6586000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr10:6585000-6586000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr10:6585000-6586000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
39	chr10:6585000-6586000	Enhancers	Brain Inferior Temporal Lobe	brain
40	chr10:6585000-6586200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr10:6585200-6585600	Flanking Active TSS	Primary hematopoietic stem cells	blood
42	chr10:6585200-6585600	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
43	chr10:6585200-6585600	Flanking Active TSS	GM12878-XiMat	blood
44	chr10:6585200-6585800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr10:6585200-6585800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
46	chr10:6585200-6586000	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr10:6585200-6586000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
48	chr10:6585200-6586000	Enhancers	iPS-20b Cell Line	embryonic stem cell
49	chr10:6585200-6586000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
50	chr10:6585200-6586200	Enhancers	K562	blood

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