Variant report

Variant	rs1327245
Chromosome Location	chr10:6598558-6598559
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6597741..6599502-chr10:6604927..6608310,3	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10752351	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10752356	0.92[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10752357	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10796257	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10796268	0.83[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10906828	0.94[AMR][1000 genomes]
rs11259486	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1327246	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1327247	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1541032	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1887325	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1983910	0.95[AMR][1000 genomes]
rs1998939	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1998940	0.92[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2011261	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4748138	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4750596	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4750617	0.80[EUR][1000 genomes]
rs6602825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7069738	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7916556	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7916931	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs943446	0.85[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs943448	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9645607	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv1047309	chr10:6495583-6714060	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv549912	chr10:6566975-6629225	Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6587800-6603600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr10:6587800-6604200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:6588600-6599000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:6588600-6599200	Weak transcription	Primary T cells from cord blood	blood
5	chr10:6591400-6599600	Weak transcription	Dnd41	blood
6	chr10:6593600-6599400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr10:6593800-6599600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr10:6595000-6602400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr10:6595400-6605000	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr10:6596000-6600400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr10:6596200-6600000	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr10:6597000-6599000	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr10:6597600-6599000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr10:6597600-6600600	Enhancers	Primary T cells fromperipheralblood	blood
15	chr10:6597600-6601800	Enhancers	Fetal Thymus	thymus
16	chr10:6597800-6600000	Enhancers	Thymus	Thymus
17	chr10:6597800-6602800	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr10:6598000-6598600	Weak transcription	Pancreas	Pancrea
19	chr10:6598000-6598800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr10:6598000-6599800	Weak transcription	Gastric	stomach
21	chr10:6598000-6600000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr10:6598000-6600000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr10:6598000-6600200	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr10:6598000-6600800	Weak transcription	Psoas Muscle	Psoas
25	chr10:6598000-6601800	Weak transcription	Esophagus	oesophagus
26	chr10:6598000-6602000	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr10:6598000-6602800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr10:6598000-6603600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr10:6598000-6604000	Weak transcription	Duodenum Mucosa	Duodenum
30	chr10:6598000-6605000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr10:6598000-6605200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr10:6598000-6605200	Weak transcription	Lung	lung
33	chr10:6598000-6605800	Weak transcription	Spleen	Spleen
34	chr10:6598000-6608000	Weak transcription	Brain Cingulate Gyrus	brain
35	chr10:6598000-6612000	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr10:6598200-6598600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links