Variant report

Variant	rs943448
Chromosome Location	chr10:6597101-6597102
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10752351	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10752356	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10752357	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10796257	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10796268	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10906828	0.94[AMR][1000 genomes]
rs11259486	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1327245	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1327246	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1327247	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1541032	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1887325	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1983910	0.95[AMR][1000 genomes]
rs1998939	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1998940	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2011261	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4748138	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4750596	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4750617	0.80[EUR][1000 genomes]
rs6602825	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7069738	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7916556	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7916931	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs943446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9645607	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv1047309	chr10:6495583-6714060	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv549912	chr10:6566975-6629225	Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6587800-6603600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr10:6587800-6604200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:6588400-6597800	Weak transcription	Thymus	Thymus
4	chr10:6588600-6599000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:6588600-6599200	Weak transcription	Primary T cells from cord blood	blood
6	chr10:6591200-6597800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr10:6591400-6597800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr10:6591400-6599600	Weak transcription	Dnd41	blood
9	chr10:6593600-6599400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr10:6593800-6597800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr10:6593800-6597800	Weak transcription	Pancreas	Pancrea
12	chr10:6593800-6599600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr10:6594400-6598000	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr10:6595000-6602400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr10:6595400-6605000	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr10:6596000-6597600	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr10:6596000-6600400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr10:6596200-6600000	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr10:6596600-6597600	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr10:6596600-6597600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr10:6596600-6597600	Weak transcription	Fetal Thymus	thymus
22	chr10:6596600-6597800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr10:6596800-6597800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr10:6597000-6597200	Enhancers	Duodenum Mucosa	Duodenum
25	chr10:6597000-6599000	Weak transcription	Monocytes-CD14+_RO01746	blood

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