Variant report

Variant	rs10753684
Chromosome Location	chr1:165571381-165571382
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:165571067..165573975-chr1:165796356..165799050,2	K562	blood:
2	chr1:165565977..165568416-chr1:165569546..165571899,2	K562	blood:
3	chr1:165569088..165572600-chr1:165598003..165601699,3	K562	blood:
4	chr1:165569692..165572245-chr1:165736970..165738543,2	K562	blood:
5	chr1:165570621..165571411-chr1:165655068..165656040,3	MCF-7	breast:
6	chr1:165570871..165572567-chr1:165795874..165797856,2	K562	blood:
7	chr1:165568647..165571505-chr1:165795399..165798198,2	MCF-7	breast:
8	chr1:165570583..165571677-chr1:165883154..165884275,9	K562	blood:

No data

Variant related genes	Relation type
ENSG00000236206	Chromatin interaction
ENSG00000143198	Chromatin interaction
ENSG00000224358	Chromatin interaction
ENSG00000143179	Chromatin interaction
ENSG00000143183	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10800113	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10800114	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10800115	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10918219	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10918221	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12133779	0.86[ASN][1000 genomes]
rs1337441	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1337444	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1337448	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1538116	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2138351	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3930290	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4656450	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4657454	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4657455	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6679871	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6692834	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7537189	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7543817	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429902	chr1:165531342-165574342	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10753684	MGST3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165568000-165572800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:165568000-165574800	Weak transcription	Right Atrium	heart
3	chr1:165568200-165579600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:165569800-165571400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr1:165569800-165571400	Enhancers	Duodenum Mucosa	Duodenum
6	chr1:165570600-165571400	Enhancers	Stomach Mucosa	stomach
7	chr1:165570800-165571400	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr1:165570800-165571400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr1:165570800-165571400	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr1:165570800-165571400	Enhancers	Primary B cells from peripheral blood	blood
11	chr1:165570800-165571400	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr1:165570800-165571400	Enhancers	Colon Smooth Muscle	Colon
13	chr1:165570800-165571400	Enhancers	Fetal Intestine Small	intestine
14	chr1:165570800-165571400	Enhancers	Rectal Mucosa Donor 29	rectum
15	chr1:165570800-165571400	Enhancers	A549	lung
16	chr1:165570800-165571400	Flanking Active TSS	K562	blood
17	chr1:165571000-165571400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr1:165571000-165571400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr1:165571000-165571400	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr1:165571000-165571400	Active TSS	iPS-15b Cell Line	embryonic stem cell
21	chr1:165571000-165571400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr1:165571000-165571400	Flanking Active TSS	Adipose Nuclei	Adipose
23	chr1:165571000-165571400	Active TSS	Brain Hippocampus Middle	brain
24	chr1:165571000-165571400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr1:165571000-165571400	Active TSS	HepG2	liver
26	chr1:165571000-165572600	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr1:165571200-165571400	Enhancers	Liver	Liver
28	chr1:165571200-165571400	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr1:165571200-165571400	Enhancers	NH-A	brain
30	chr1:165571200-165571400	Enhancers	Osteobl	bone

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