Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:165577926..165581441-chr1:165598731..165602134,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143198	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10733045	0.85[AMR][1000 genomes]
rs10753684	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10800113	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10800114	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10800115	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10918219	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12133779	0.88[ASN][1000 genomes]
rs1337441	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1337444	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1337448	0.95[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs1538116	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2138351	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3930290	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4656450	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4657454	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4657455	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6679871	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6692834	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7537189	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7543817	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10918221	MGST3	cis	Esophagus Mucosa	GTEx
rs10918221	MGST3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165568200-165579600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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