Variant report

Variant	rs1337441
Chromosome Location	chr1:165573850-165573851
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:165571067..165573975-chr1:165796356..165799050,2	K562	blood:
2	chr1:165572183..165574068-chr1:165736733..165739045,2	K562	blood:
3	chr1:165573640..165576150-chr1:165580114..165581714,2	K562	blood:

Variant related genes	Relation type
ENSG00000143179	Chromatin interaction
ENSG00000224358	Chromatin interaction
ENSG00000143183	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10753684	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10800113	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10800114	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.98[TSI][hapmap];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10800115	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10800118	0.83[CHB][hapmap]
rs10918219	0.88[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10918221	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12133779	0.88[ASN][1000 genomes]
rs1337444	0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.92[JPT][hapmap];0.96[MEX][hapmap];0.89[TSI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1337448	0.92[EUR][1000 genomes]
rs1538116	0.81[CEU][hapmap];0.94[CHB][hapmap];0.86[CHD][hapmap];0.83[JPT][hapmap];0.80[MEX][hapmap];0.98[TSI][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2138351	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3930290	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4656450	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4657454	0.81[CEU][hapmap];0.94[CHB][hapmap];0.86[CHD][hapmap];0.83[JPT][hapmap];0.80[MEX][hapmap];0.98[TSI][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4657455	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6679871	0.80[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6692834	0.84[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7537189	0.92[CHB][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7543817	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429902	chr1:165531342-165574342	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1337441	MGST3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165568000-165574800	Weak transcription	Right Atrium	heart
2	chr1:165568200-165579600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links