Variant report

Variant	rs1337444
Chromosome Location	chr1:165589535-165589536
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:165589382..165591602-chr1:165595692..165598482,2	K562	blood:
2	chr1:165589382..165593490-chr1:165595077..165601598,7	K562	blood:
3	chr1:165587860..165589977-chr1:165598582..165601844,3	K562	blood:

Variant related genes	Relation type
ENSG00000143198	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10733045	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10737514	1.00[YRI][hapmap]
rs10753684	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10800113	0.83[EUR][1000 genomes]
rs10800114	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.84[MEX][hapmap];0.87[TSI][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10800115	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10800118	0.83[CHB][hapmap]
rs10918219	1.00[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10918221	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12133779	0.88[ASN][1000 genomes]
rs1337441	0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.92[JPT][hapmap];0.96[MEX][hapmap];0.89[TSI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1337448	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1538116	0.85[CEU][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];0.84[MEX][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs2138351	0.89[EUR][1000 genomes]
rs3930290	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4656450	0.90[EUR][1000 genomes]
rs4657454	0.85[CEU][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];0.84[MEX][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes]
rs4657455	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6679871	0.85[CEU][hapmap];0.94[CHB][hapmap];0.89[EUR][1000 genomes]
rs6692834	0.85[CEU][hapmap];0.94[CHB][hapmap];0.87[EUR][1000 genomes]
rs7537189	0.91[CEU][hapmap];0.92[CHB][hapmap];0.90[EUR][1000 genomes]
rs7543817	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1337444	MGST3	cis	Esophagus Mucosa	GTEx
rs1337444	ILDR2	cis	parietal	SCAN
rs1337444	MGST3	cis	lymphoblastoid	seeQTL
rs1337444	MGST3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165589400-165590000	Enhancers	HUES48 Cell Line	embryonic stem cell

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