Variant report

Variant	rs10918219
Chromosome Location	chr1:165569053-165569054
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:165567791..165570618-chr1:165797003..165798586,2	K562	blood:
2	chr1:165568647..165571505-chr1:165795399..165798198,2	MCF-7	breast:
3	chr1:165569014..165571063-chr1:165883495..165885234,2	K562	blood:

Variant related genes	Relation type
ENSG00000143179	Chromatin interaction
ENSG00000143183	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10737514	1.00[YRI][hapmap]
rs10753684	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10800113	0.84[EUR][1000 genomes]
rs10800114	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10800115	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10918221	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1337441	0.88[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1337444	1.00[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1337448	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1538116	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2138351	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3930290	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4656450	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4657454	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4657455	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6679871	0.88[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6692834	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7537189	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7543817	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429902	chr1:165531342-165574342	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10918219	MGST3	Cis_1M	lymphoblastoid	RTeQTL
rs10918219	MGST3	cis	Esophagus Mucosa	GTEx

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165568000-165572800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:165568000-165574800	Weak transcription	Right Atrium	heart
3	chr1:165568200-165569200	Enhancers	Liver	Liver
4	chr1:165568200-165569200	Enhancers	NHDF-Ad	bronchial
5	chr1:165568200-165569800	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr1:165568200-165569800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr1:165568200-165569800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr1:165568200-165570000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr1:165568200-165570200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr1:165568200-165570200	Weak transcription	Placenta	Placenta
11	chr1:165568200-165570400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr1:165568200-165570600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr1:165568200-165570600	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr1:165568200-165570600	Weak transcription	Brain Hippocampus Middle	brain
15	chr1:165568200-165570600	Weak transcription	Stomach Mucosa	stomach
16	chr1:165568200-165570800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr1:165568200-165570800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr1:165568200-165570800	Weak transcription	Primary B cells from peripheral blood	blood
19	chr1:165568200-165570800	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr1:165568200-165570800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr1:165568200-165570800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr1:165568200-165570800	Weak transcription	Brain Substantia Nigra	brain
23	chr1:165568200-165570800	Weak transcription	Colon Smooth Muscle	Colon
24	chr1:165568200-165570800	Weak transcription	Fetal Heart	heart
25	chr1:165568200-165570800	Weak transcription	Fetal Intestine Small	intestine
26	chr1:165568200-165571000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr1:165568200-165571000	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr1:165568200-165571000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr1:165568200-165571000	Enhancers	HepG2	liver
30	chr1:165568200-165579600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr1:165568400-165570000	Weak transcription	K562	blood
32	chr1:165568400-165570800	Weak transcription	Adipose Nuclei	Adipose
33	chr1:165568400-165570800	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr1:165568400-165570800	Weak transcription	A549	lung
35	chr1:165568400-165570800	Weak transcription	Hela-S3	cervix
36	chr1:165568600-165569800	Weak transcription	Duodenum Mucosa	Duodenum
37	chr1:165568600-165570000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr1:165568600-165570800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr1:165568600-165570800	Weak transcription	Brain Anterior Caudate	brain
40	chr1:165568600-165570800	Weak transcription	GM12878-XiMat	blood
41	chr1:165568600-165571000	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr1:165568600-165571000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr1:165568600-165571000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr1:165568800-165570800	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr1:165568800-165570800	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr1:165569000-165571000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr1:165569000-165571200	Weak transcription	Osteobl	bone

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