Variant report

Variant	rs10759736
Chromosome Location	chr9:117523192-117523193
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10759734	0.82[AFR][1000 genomes]
rs10982396	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12352488	1.00[ASN][1000 genomes]
rs1322063	1.00[ASN][1000 genomes]
rs4978607	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6478105	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7469678	1.00[ASN][1000 genomes]
rs7869598	1.00[ASN][1000 genomes]
rs9299219	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10759736	SLC46A2	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117520600-117523800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr9:117520800-117523600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr9:117520800-117523600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr9:117520800-117523800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr9:117522200-117524000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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