Variant report

Variant	rs9299219
Chromosome Location	chr9:117495971-117495972
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10759734	0.86[AFR][1000 genomes]
rs10759736	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10982396	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12352488	1.00[ASN][1000 genomes]
rs1322063	1.00[ASN][1000 genomes]
rs4978607	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6478105	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7469678	1.00[ASN][1000 genomes]
rs7869598	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831694	chr9:117328640-117502785	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv893766	chr9:117385992-117516418	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117487000-117498000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr9:117494000-117496800	Enhancers	HMEC	breast
3	chr9:117494200-117496000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr9:117494200-117497200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:117494400-117497200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr9:117494800-117499800	Weak transcription	Right Atrium	heart
7	chr9:117495200-117496200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr9:117495200-117497200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr9:117495200-117497200	Enhancers	NHEK	skin
10	chr9:117495200-117497400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr9:117495200-117497800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:117495200-117497800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr9:117495200-117497800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr9:117495200-117501000	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr9:117495200-117501400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr9:117495400-117496400	Weak transcription	NH-A	brain
17	chr9:117495400-117497200	Weak transcription	NHDF-Ad	bronchial
18	chr9:117495400-117497800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr9:117495400-117498000	Weak transcription	HSMM	muscle
20	chr9:117495400-117498000	Weak transcription	Osteobl	bone
21	chr9:117495400-117499600	Enhancers	Hela-S3	cervix
22	chr9:117495400-117501000	Weak transcription	HSMMtube	muscle
23	chr9:117495600-117496000	Weak transcription	A549	lung

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