Variant report

Variant	rs4978607
Chromosome Location	chr9:117508437-117508438
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10759736	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10982396	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12352488	1.00[ASN][1000 genomes]
rs1322063	1.00[ASN][1000 genomes]
rs6478105	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7469678	1.00[ASN][1000 genomes]
rs7869598	1.00[ASN][1000 genomes]
rs9299219	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893766	chr9:117385992-117516418	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117506600-117510200	Enhancers	NHDF-Ad	bronchial
2	chr9:117506600-117510600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:117506800-117509200	Enhancers	Muscle Satellite Cultured Cells	--
4	chr9:117506800-117509200	Enhancers	Osteobl	bone
5	chr9:117507000-117508600	Enhancers	HUVEC	blood vessel
6	chr9:117507400-117509200	Enhancers	Brain Anterior Caudate	brain
7	chr9:117507400-117509200	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr9:117507400-117509200	Enhancers	Hela-S3	cervix
9	chr9:117507400-117509600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:117507400-117509600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr9:117507400-117509600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:117507600-117508600	Enhancers	Adipose Nuclei	Adipose
13	chr9:117507600-117508600	Enhancers	Aorta	Aorta
14	chr9:117507600-117509200	Enhancers	Brain Substantia Nigra	brain
15	chr9:117507600-117509400	Enhancers	Brain Hippocampus Middle	brain
16	chr9:117507600-117509600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr9:117507600-117510200	Enhancers	Brain Germinal Matrix	brain
18	chr9:117507600-117510200	Enhancers	Fetal Stomach	stomach
19	chr9:117507800-117509000	Enhancers	Fetal Kidney	kidney
20	chr9:117507800-117509600	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr9:117508000-117508600	Enhancers	Placenta	Placenta
22	chr9:117508000-117508800	Enhancers	NHLF	lung
23	chr9:117508000-117509000	Enhancers	Colon Smooth Muscle	Colon
24	chr9:117508200-117508600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr9:117508200-117508800	Enhancers	Fetal Muscle Trunk	muscle
26	chr9:117508200-117509200	Enhancers	Brain Cingulate Gyrus	brain
27	chr9:117508400-117508600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr9:117508400-117509000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr9:117508400-117509000	Enhancers	Fetal Muscle Leg	muscle

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