Variant report

Variant	rs1076015
Chromosome Location	chr4:47289971-47289972
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10000697	0.89[CHB][hapmap];0.87[CHD][hapmap];0.94[JPT][hapmap];0.81[TSI][hapmap]
rs10023965	0.89[CHB][hapmap];0.84[CHD][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap]
rs10440176	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs1076016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11731871	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs12331018	0.89[CHB][hapmap];0.87[CHD][hapmap];0.94[JPT][hapmap];0.81[TSI][hapmap]
rs17600296	0.81[JPT][hapmap]
rs2078610	0.84[YRI][hapmap]
rs28595697	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs35744755	0.81[JPT][hapmap]
rs3822112	0.89[CHB][hapmap];0.87[CHD][hapmap];0.94[JPT][hapmap];0.81[TSI][hapmap]
rs4261959	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs4261968	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs4302438	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs4386575	0.81[CHD][hapmap];0.87[JPT][hapmap]
rs4396966	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4495018	0.89[CHB][hapmap];0.87[CHD][hapmap];0.94[JPT][hapmap]
rs4577548	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs4597807	0.93[JPT][hapmap]
rs4599390	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs4695209	0.84[CHD][hapmap];0.81[JPT][hapmap]
rs6447546	0.89[CHB][hapmap];0.87[CHD][hapmap];0.94[JPT][hapmap];0.81[TSI][hapmap]
rs6820498	0.93[JPT][hapmap]
rs6831556	0.83[CHB][hapmap];0.81[CHD][hapmap];0.87[JPT][hapmap]
rs6852448	0.83[YRI][hapmap]
rs7665508	0.83[CHB][hapmap];0.94[JPT][hapmap]
rs9291305	0.89[CHB][hapmap];0.84[CHD][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];0.81[TSI][hapmap]
rs9683412	0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv879004	chr4:47234200-47322190	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1076015	CORIN	cis	parietal	SCAN
rs1076015	YIPF7	cis	parietal	SCAN
rs1076015	TXK	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47281600-47296400	Weak transcription	Brain Angular Gyrus	brain
2	chr4:47289800-47290200	Enhancers	NH-A	brain
3	chr4:47289800-47290200	Enhancers	Osteobl	bone

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