Variant report

Variant	rs35744755
Chromosome Location	chr4:47311978-47311979
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:47311976-47312123	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000238301	TF binding region

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10000697	0.84[CHB][hapmap];0.87[CHD][hapmap];0.87[JPT][hapmap]
rs10023965	0.84[CHB][hapmap];0.84[CHD][hapmap];0.87[JPT][hapmap]
rs10440176	0.88[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs1076015	0.81[JPT][hapmap]
rs11731871	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs11737184	0.82[ASN][1000 genomes]
rs12331018	0.84[CHB][hapmap];0.88[CHD][hapmap];0.87[JPT][hapmap]
rs12500794	0.81[ASN][1000 genomes]
rs12640532	0.93[ASN][1000 genomes]
rs17600296	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17600330	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17653263	0.88[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs28595697	0.80[ASN][1000 genomes]
rs3822112	0.84[CHB][hapmap];0.88[CHD][hapmap];0.87[JPT][hapmap]
rs4261959	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs4261968	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs4295236	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4302438	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs4386575	0.81[CHD][hapmap]
rs4396966	0.81[CHD][hapmap];0.81[JPT][hapmap]
rs4495018	0.84[CHB][hapmap];0.88[CHD][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs4508859	0.82[ASN][1000 genomes]
rs4597807	0.85[JPT][hapmap]
rs4599390	0.81[JPT][hapmap]
rs4694842	0.88[ASN][1000 genomes]
rs4695209	0.94[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4695210	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4695213	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6447546	0.84[CHB][hapmap];0.88[CHD][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs6820498	0.85[JPT][hapmap]
rs6831556	0.81[CHD][hapmap]
rs7665508	0.87[JPT][hapmap]
rs7674333	0.82[ASN][1000 genomes]
rs7683663	0.82[ASN][1000 genomes]
rs7683676	0.82[ASN][1000 genomes]
rs7687439	0.82[ASN][1000 genomes]
rs9291305	0.84[CHB][hapmap];0.84[CHD][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs9917915	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv879004	chr4:47234200-47322190	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47310400-47312200	Enhancers	Brain Anterior Caudate	brain

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