Variant report
| Variant | rs4295236 |
|---|---|
| Chromosome Location | chr4:47335910-47335911 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10440176 | 0.91[ASN][1000 genomes] |
| rs11737184 | 0.91[ASN][1000 genomes] |
| rs12500794 | 0.90[ASN][1000 genomes] |
| rs12640532 | 0.87[ASN][1000 genomes] |
| rs17600296 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs17653263 | 0.85[ASN][1000 genomes] |
| rs34098612 | 0.80[ASN][1000 genomes] |
| rs34429982 | 0.82[ASN][1000 genomes] |
| rs35744755 | 1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4495018 | 0.91[ASN][1000 genomes] |
| rs4508859 | 0.91[ASN][1000 genomes] |
| rs4602475 | 0.80[ASN][1000 genomes] |
| rs4694842 | 0.82[ASN][1000 genomes] |
| rs4695209 | 0.88[ASN][1000 genomes] |
| rs4695210 | 0.90[ASN][1000 genomes] |
| rs4695213 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55825318 | 0.82[ASN][1000 genomes] |
| rs56336915 | 0.82[ASN][1000 genomes] |
| rs6447546 | 0.91[ASN][1000 genomes] |
| rs6820498 | 0.83[ASN][1000 genomes] |
| rs6831556 | 0.83[ASN][1000 genomes] |
| rs6833189 | 0.83[ASN][1000 genomes] |
| rs6837135 | 0.83[ASN][1000 genomes] |
| rs7659625 | 0.81[ASN][1000 genomes] |
| rs7664909 | 0.82[ASN][1000 genomes] |
| rs7665508 | 0.82[ASN][1000 genomes] |
| rs7666958 | 0.82[ASN][1000 genomes] |
| rs7674333 | 0.91[ASN][1000 genomes] |
| rs7683663 | 0.91[ASN][1000 genomes] |
| rs7683676 | 0.91[ASN][1000 genomes] |
| rs7687439 | 0.91[ASN][1000 genomes] |
| rs9291305 | 0.90[ASN][1000 genomes] |
| rs9917915 | 0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv998919 | chr4:47207023-47476876 | Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:47332200-47336000 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
