Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10000697	0.87[JPT][hapmap]
rs10023965	0.87[JPT][hapmap]
rs10440176	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs1076015	0.84[CHD][hapmap];0.81[JPT][hapmap]
rs11731871	0.87[JPT][hapmap]
rs12331018	0.87[JPT][hapmap]
rs12640532	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17600296	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs17600330	1.00[JPT][hapmap]
rs17653240	0.89[CEU][hapmap];0.81[TSI][hapmap]
rs17653263	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35744755	0.94[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs3822112	0.87[JPT][hapmap]
rs4261959	0.87[JPT][hapmap]
rs4261968	0.87[JPT][hapmap]
rs4295236	0.88[ASN][1000 genomes]
rs4302438	0.87[JPT][hapmap]
rs4396966	0.84[CHD][hapmap];0.81[JPT][hapmap]
rs4495018	0.87[JPT][hapmap]
rs4597807	0.85[JPT][hapmap]
rs4599390	0.81[JPT][hapmap]
rs4694842	0.87[ASN][1000 genomes]
rs4695210	0.93[ASN][1000 genomes]
rs4695213	0.88[ASN][1000 genomes]
rs6447546	0.87[JPT][hapmap]
rs6820498	0.85[JPT][hapmap]
rs7665508	0.87[JPT][hapmap]
rs9291305	0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs9917915	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv879004	chr4:47234200-47322190	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47281600-47296400	Weak transcription	Brain Angular Gyrus	brain

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