Variant report

Variant	rs17600296
Chromosome Location	chr4:47323045-47323046
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10000697	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs10023965	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs10440176	0.89[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs1076015	0.81[JPT][hapmap]
rs11731871	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs11737184	0.89[ASN][1000 genomes]
rs12331018	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs12500794	0.89[ASN][1000 genomes]
rs12640532	0.85[ASN][1000 genomes]
rs17600330	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs17653263	0.89[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.83[ASN][1000 genomes]
rs34429982	0.80[ASN][1000 genomes]
rs35744755	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3822112	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs4261959	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs4261968	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs4295236	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4302438	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs4396966	0.81[JPT][hapmap]
rs4495018	0.84[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs4508859	0.89[ASN][1000 genomes]
rs4597807	0.85[JPT][hapmap]
rs4599390	0.81[JPT][hapmap]
rs4694842	0.80[ASN][1000 genomes]
rs4695209	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs4695210	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4695213	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55825318	0.80[ASN][1000 genomes]
rs56336915	0.80[ASN][1000 genomes]
rs6447546	0.84[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs6820498	0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs6831556	0.81[ASN][1000 genomes]
rs6833189	0.81[ASN][1000 genomes]
rs6837135	0.81[ASN][1000 genomes]
rs7659625	0.83[ASN][1000 genomes]
rs7664909	0.80[ASN][1000 genomes]
rs7665508	0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs7666958	0.80[ASN][1000 genomes]
rs7674333	0.89[ASN][1000 genomes]
rs7683663	0.89[ASN][1000 genomes]
rs7683676	0.89[ASN][1000 genomes]
rs7687439	0.89[ASN][1000 genomes]
rs9291305	0.84[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs9917915	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47323000-47328200	Weak transcription	Brain Anterior Caudate	brain

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