Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10000697	0.81[JPT][hapmap]
rs10023965	0.81[JPT][hapmap]
rs10440176	0.82[JPT][hapmap]
rs11731871	0.83[JPT][hapmap]
rs12331018	0.81[JPT][hapmap]
rs12640532	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17600296	0.89[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.83[ASN][1000 genomes]
rs17600330	0.93[JPT][hapmap]
rs17653240	0.89[CEU][hapmap]
rs35744755	0.88[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs3822112	0.81[JPT][hapmap]
rs4261959	0.83[JPT][hapmap]
rs4261968	0.83[JPT][hapmap]
rs4295236	0.85[ASN][1000 genomes]
rs4302438	0.83[JPT][hapmap]
rs4495018	0.81[JPT][hapmap]
rs4694842	0.84[ASN][1000 genomes]
rs4695209	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4695210	0.90[ASN][1000 genomes]
rs4695213	0.85[ASN][1000 genomes]
rs6447546	0.81[JPT][hapmap]
rs6820498	0.81[JPT][hapmap]
rs7665508	0.81[JPT][hapmap]
rs9291305	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv879004	chr4:47234200-47322190	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47281600-47296400	Weak transcription	Brain Angular Gyrus	brain

Quick Search: