Variant report

Variant	rs1076272
Chromosome Location	chr7:98031005-98031006
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr7:98030294-98031064	HCT-116	colon:	n/a	chr7:98030639-98030655 chr7:98030640-98030653 chr7:98030638-98030656
2	MXI1	chr7:98029874-98031023	IMR90	lung:	n/a	n/a
3	RAD21	chr7:98029888-98031369	SK-N-SH	brain:	n/a	n/a
4	RAD21	chr7:98030038-98031094	HCT-116	colon:	n/a	n/a
5	MAX	chr7:98029862-98031030	HepG2	liver:	n/a	n/a
6	MAX	chr7:98029544-98031012	A549	lung:	n/a	n/a
7	ZBTB7A	chr7:98030499-98031013	ECC-1	luminal epithelium:	n/a	chr7:98030579-98030587 chr7:98030639-98030648
8	ZEB1	chr7:98029876-98031074	HepG2	liver:	n/a	n/a
9	SMARCB1	chr7:98029865-98031007	Hela-S3	cervix:	n/a	n/a
10	CTCF	chr7:98029957-98031100	A549	lung:	n/a	chr7:98030639-98030655 chr7:98030640-98030653 chr7:98030638-98030656
11	SMC3	chr7:98030010-98031400	SK-N-SH	brain:	n/a	chr7:98030640-98030654
12	CTCF	chr7:98030125-98031017	MCF-7	breast:	n/a	chr7:98030639-98030655 chr7:98030640-98030653 chr7:98030638-98030656
13	CTCF	chr7:98029945-98031379	SK-N-SH	brain:	n/a	chr7:98030639-98030655 chr7:98030640-98030653 chr7:98030638-98030656
14	CTCF	chr7:98030860-98031010	NHLF	lung:	n/a	n/a
15	MAX	chr7:98029851-98031030	HepG2	liver:	n/a	n/a
16	RAD21	chr7:98030063-98031085	HCT-116	colon:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:97948846..97953573-chr7:98026962..98031463,6	MCF-7	breast:
2	chr7:97951366..97952341-chr7:98030179..98031154,3	MCF-7	breast:
3	chr7:97951456..97952264-chr7:98030192..98031073,2	MCF-7	breast:
4	chr7:97948534..97953392-chr7:98027922..98031084,5	MCF-7	breast:
5	chr7:98015865..98017595-chr7:98028896..98031691,2	MCF-7	breast:
6	chr7:98028440..98031404-chr7:98475727..98477431,2	MCF-7	breast:
7	chr7:97880638..97884180-chr7:98029742..98031678,3	MCF-7	breast:

Variant related genes	Relation type
BAIAP2L1	TF binding region
ENSG00000214389	Chromatin interaction
ENSG00000272950	Chromatin interaction
ENSG00000196367	Chromatin interaction
ENSG00000205356	Chromatin interaction
ENSG00000164713	Chromatin interaction

Extended variants
information (count: 165 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:153)

rs_ID	r²[population]
rs10808107	0.89[EUR][1000 genomes]
rs10953255	0.80[EUR][1000 genomes]
rs10953256	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes]
rs10953257	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.90[EUR][1000 genomes]
rs10953261	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1132971	0.96[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.80[EUR][1000 genomes]
rs11496115	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11760930	0.81[EUR][1000 genomes]
rs11761206	0.88[EUR][1000 genomes]
rs11765794	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11766808	0.81[EUR][1000 genomes]
rs11984183	0.82[CEU][hapmap]
rs12112351	0.86[EUR][1000 genomes]
rs12154723	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12667634	0.90[EUR][1000 genomes]
rs12672092	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12673586	0.85[EUR][1000 genomes]
rs12704982	0.81[EUR][1000 genomes]
rs12704983	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap]
rs12704988	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12704989	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12728	0.96[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs12873	0.96[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];0.80[EUR][1000 genomes]
rs13232181	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.86[EUR][1000 genomes]
rs13237102	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13245076	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13246725	0.81[EUR][1000 genomes]
rs13246843	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13246868	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13246942	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs13307593	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1468338	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes]
rs1468340	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1468341	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17436977	1.00[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap]
rs1859482	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2107716	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.87[EUR][1000 genomes]
rs2158553	0.88[EUR][1000 genomes]
rs2240349	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2286074	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes]
rs2291747	0.93[CEU][hapmap];0.85[JPT][hapmap]
rs2394852	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2394854	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34129434	0.81[EUR][1000 genomes]
rs34695842	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs34717219	0.90[EUR][1000 genomes]
rs34835415	0.90[EUR][1000 genomes]
rs35535338	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35941058	0.81[EUR][1000 genomes]
rs35997266	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs36017146	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs36019673	0.82[EUR][1000 genomes]
rs36099592	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3779193	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3779194	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3801251	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3801254	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3801255	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3801256	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3801257	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3801263	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.90[EUR][1000 genomes]
rs3801264	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes]
rs3823740	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4075057	0.81[EUR][1000 genomes]
rs55825602	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56286037	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60077733	0.88[EUR][1000 genomes]
rs62478174	0.85[EUR][1000 genomes]
rs62478175	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62478200	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62478203	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62478233	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62478236	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62478237	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62479853	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6465663	0.81[EUR][1000 genomes]
rs6465664	0.96[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.80[EUR][1000 genomes]
rs6465665	0.96[CEU][hapmap];0.93[CHB][hapmap];0.83[EUR][1000 genomes]
rs6465666	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6465667	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6465669	0.87[EUR][1000 genomes]
rs6465670	0.87[EUR][1000 genomes]
rs6465671	0.89[EUR][1000 genomes]
rs6465672	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.90[EUR][1000 genomes]
rs6465673	0.88[EUR][1000 genomes]
rs6465675	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6465677	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6465678	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6465680	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6465681	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6465682	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6465683	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67132564	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6944262	1.00[CEU][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6945554	0.96[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6947208	0.80[EUR][1000 genomes]
rs6947340	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap]
rs6948346	0.87[EUR][1000 genomes]
rs6948540	0.96[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.90[EUR][1000 genomes]
rs6949214	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6949718	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6955647	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6956686	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6959506	0.90[EUR][1000 genomes]
rs6961129	0.96[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6961438	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6961790	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6963210	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes]
rs6967457	0.80[EUR][1000 genomes]
rs6967576	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6967934	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6968144	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6968193	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap]
rs6968321	0.90[EUR][1000 genomes]
rs6969234	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6969731	0.81[EUR][1000 genomes]
rs6970801	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes]
rs6970990	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs6971825	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6973775	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6974943	0.90[EUR][1000 genomes]
rs6975156	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.80[EUR][1000 genomes]
rs6979373	0.90[EUR][1000 genomes]
rs71563562	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73147342	0.81[EUR][1000 genomes]
rs736753	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes]
rs736754	0.81[EUR][1000 genomes]
rs7458551	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes]
rs747632	0.81[CEU][hapmap]
rs7776638	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7777415	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.84[YRI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7781916	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes]
rs7785612	0.80[EUR][1000 genomes]
rs7787009	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7787418	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7787858	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7789380	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes]
rs7791321	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7795176	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7796762	0.96[CEU][hapmap];0.81[CHB][hapmap];0.92[JPT][hapmap]
rs7797943	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes]
rs7801992	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7802541	0.80[EUR][1000 genomes]
rs7802794	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7803372	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7805267	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7806524	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7806739	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7807455	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7807555	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7812180	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs9648908	0.89[EUR][1000 genomes]
rs9769767	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031371	chr7:97312452-98070538	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1017481	chr7:97597641-98041043	Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
3	nsv539031	chr7:97597641-98041043	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
4	nsv1019531	chr7:97653880-98034129	Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv539032	chr7:97653880-98034129	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv831067	chr7:97860169-98065528	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv1026477	chr7:97869446-98034129	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	nsv888766	chr7:97975542-98123880	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
9	esv1795864	chr7:98013507-98040788	Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
10	nsv607919	chr7:98021211-98124854	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
11	nsv539034	chr7:98029119-98106260	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
12	esv3405212	chr7:98029241-98031789	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1076272	BAIAP2L1	Cis_1M	lymphoblastoid	RTeQTL
rs1076272	DKFZP434B0335	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98030400-98031200	Enhancers	Primary hematopoietic stem cells	blood
2	chr7:98030400-98031800	Enhancers	Stomach Mucosa	stomach
3	chr7:98030800-98031200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
4	chr7:98030800-98031200	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr7:98030800-98031200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr7:98030800-98031400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:98030800-98031600	Weak transcription	Gastric	stomach
8	chr7:98030800-98031600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr7:98030800-98034400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr7:98031000-98031200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr7:98031000-98031200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr7:98031000-98031200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr7:98031000-98031200	Enhancers	Colonic Mucosa	Colon
14	chr7:98031000-98031200	Active TSS	HepG2	liver
15	chr7:98031000-98031400	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr7:98031000-98031400	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr7:98031000-98031400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr7:98031000-98031600	Enhancers	A549	lung
19	chr7:98031000-98032600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr7:98031000-98034000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr7:98031000-98034000	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr7:98031000-98034200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr7:98031000-98034400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr7:98031000-98050400	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links