Variant report

Variant	rs10779280
Chromosome Location	chr1:217011491-217011492
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10492952	1.00[ASN][1000 genomes]
rs10492953	0.99[ASN][1000 genomes]
rs10779282	1.00[ASN][1000 genomes]
rs10779283	1.00[ASN][1000 genomes]
rs10863276	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11117697	1.00[ASN][1000 genomes]
rs11117701	1.00[ASN][1000 genomes]
rs11572556	0.95[ASN][1000 genomes]
rs11572571	1.00[ASN][1000 genomes]
rs11572574	0.99[ASN][1000 genomes]
rs11572578	1.00[ASN][1000 genomes]
rs11585302	0.99[ASN][1000 genomes]
rs11585678	0.99[ASN][1000 genomes]
rs11807312	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12086903	0.93[ASN][1000 genomes]
rs12095761	0.93[ASN][1000 genomes]
rs12410353	0.97[ASN][1000 genomes]
rs12737994	0.99[ASN][1000 genomes]
rs12743040	1.00[ASN][1000 genomes]
rs12743159	1.00[ASN][1000 genomes]
rs12743319	1.00[ASN][1000 genomes]
rs12745013	1.00[ASN][1000 genomes]
rs12758273	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12758957	1.00[ASN][1000 genomes]
rs1370147	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1370148	0.96[ASN][1000 genomes]
rs1436894	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1542002	1.00[ASN][1000 genomes]
rs1561184	0.99[ASN][1000 genomes]
rs17044178	1.00[ASN][1000 genomes]
rs1821788	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2164616	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2263103	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2377356	0.82[ASN][1000 genomes]
rs2576251	1.00[ASN][1000 genomes]
rs2576252	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2576254	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2576256	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2576257	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2813680	1.00[ASN][1000 genomes]
rs2813681	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2813683	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2813687	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34063139	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36074629	1.00[ASN][1000 genomes]
rs4581330	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61817889	1.00[ASN][1000 genomes]
rs6604648	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6656008	0.95[ASN][1000 genomes]
rs6656300	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7513033	1.00[ASN][1000 genomes]
rs7516551	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7521231	0.95[ASN][1000 genomes]
rs7523966	0.95[ASN][1000 genomes]
rs7532492	0.96[ASN][1000 genomes]
rs7537081	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7539722	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7548403	0.99[ASN][1000 genomes]
rs7552492	0.99[ASN][1000 genomes]
rs920171	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762163	chr1:216982140-217015625	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217004400-217014600	Weak transcription	Fetal Muscle Leg	muscle
2	chr1:217006000-217038000	Weak transcription	Pancreas	Pancrea
3	chr1:217010200-217011800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:217010400-217011600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr1:217010800-217011600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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