Variant report

Variant	rs12743159
Chromosome Location	chr1:217009794-217009795
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10492952	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10492953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10779280	1.00[ASN][1000 genomes]
rs10779282	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10779283	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10863276	0.99[ASN][1000 genomes]
rs11117697	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11117701	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11572556	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11572571	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11572574	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11572578	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11572581	0.87[EUR][1000 genomes]
rs11585302	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11585678	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11807312	0.99[ASN][1000 genomes]
rs12086903	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12095761	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12402871	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12410353	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12737994	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12743040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12743319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12745013	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12758273	0.99[ASN][1000 genomes]
rs12758957	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1370147	0.97[ASN][1000 genomes]
rs1370148	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1436893	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1436894	1.00[ASN][1000 genomes]
rs1542002	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1542003	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1561184	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1561186	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17044178	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17044214	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1821788	1.00[ASN][1000 genomes]
rs2164616	0.99[ASN][1000 genomes]
rs2263103	1.00[ASN][1000 genomes]
rs2377356	0.82[ASN][1000 genomes]
rs2576251	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2576252	1.00[ASN][1000 genomes]
rs2576254	1.00[ASN][1000 genomes]
rs2576256	1.00[ASN][1000 genomes]
rs2576257	1.00[ASN][1000 genomes]
rs2813680	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2813681	1.00[ASN][1000 genomes]
rs2813683	1.00[ASN][1000 genomes]
rs2813687	1.00[ASN][1000 genomes]
rs34063139	1.00[ASN][1000 genomes]
rs36074629	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4581330	0.95[ASN][1000 genomes]
rs4593893	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61817889	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6604648	1.00[ASN][1000 genomes]
rs6656008	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6656300	0.95[ASN][1000 genomes]
rs67182716	0.86[EUR][1000 genomes]
rs7513033	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7516551	1.00[ASN][1000 genomes]
rs7521231	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7523966	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7532492	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7537081	0.99[ASN][1000 genomes]
rs7539722	1.00[ASN][1000 genomes]
rs7548403	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7552492	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs920171	1.00[ASN][1000 genomes]
rs9787079	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762163	chr1:216982140-217015625	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217004400-217014600	Weak transcription	Fetal Muscle Leg	muscle
2	chr1:217005600-217009800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr1:217006000-217038000	Weak transcription	Pancreas	Pancrea
4	chr1:217008800-217009800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr1:217009000-217010400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr1:217009600-217009800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
7	chr1:217009600-217010200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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