Variant report

Variant	rs2164616
Chromosome Location	chr1:217037899-217037900
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GPATCH2-6	chr1:217035572-217038520	NONHSAT009490

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10492952	0.99[ASN][1000 genomes]
rs10492953	0.97[ASN][1000 genomes]
rs10779280	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10779282	0.99[ASN][1000 genomes]
rs10779283	0.99[ASN][1000 genomes]
rs10863276	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11117697	0.99[ASN][1000 genomes]
rs11117701	0.99[ASN][1000 genomes]
rs11572556	0.93[ASN][1000 genomes]
rs11572571	0.99[ASN][1000 genomes]
rs11572574	0.97[ASN][1000 genomes]
rs11572578	0.99[ASN][1000 genomes]
rs11585302	0.97[ASN][1000 genomes]
rs11585678	0.97[ASN][1000 genomes]
rs11807312	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12086903	0.92[ASN][1000 genomes]
rs12095761	0.92[ASN][1000 genomes]
rs12410353	0.96[ASN][1000 genomes]
rs12737994	0.97[ASN][1000 genomes]
rs12743040	0.99[ASN][1000 genomes]
rs12743159	0.99[ASN][1000 genomes]
rs12743319	0.99[ASN][1000 genomes]
rs12745013	0.99[ASN][1000 genomes]
rs12758273	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12758957	0.99[ASN][1000 genomes]
rs1370147	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1370148	0.95[ASN][1000 genomes]
rs1436894	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1542002	0.99[ASN][1000 genomes]
rs1561184	0.97[ASN][1000 genomes]
rs17044178	0.99[ASN][1000 genomes]
rs1821788	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2263103	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2377356	0.81[ASN][1000 genomes]
rs2576251	0.99[ASN][1000 genomes]
rs2576252	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2576254	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2576256	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2576257	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2813680	0.99[ASN][1000 genomes]
rs2813681	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2813683	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2813687	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34063139	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs36074629	0.99[ASN][1000 genomes]
rs4581330	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61817889	0.99[ASN][1000 genomes]
rs6604648	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6656008	0.93[ASN][1000 genomes]
rs6656300	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7513033	0.99[ASN][1000 genomes]
rs7516551	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7521231	0.93[ASN][1000 genomes]
rs7523966	0.93[ASN][1000 genomes]
rs7532492	0.95[ASN][1000 genomes]
rs7537081	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7539722	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7548403	0.97[ASN][1000 genomes]
rs7552492	0.97[ASN][1000 genomes]
rs920171	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217006000-217038000	Weak transcription	Pancreas	Pancrea

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