Variant report

Variant	rs12086903
Chromosome Location	chr1:217020992-217020993
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs1030847	0.94[CEU][hapmap];0.90[JPT][hapmap]
rs10492952	1.00[CEU][hapmap];0.83[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10492953	0.83[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.84[MEX][hapmap];0.92[ASN][1000 genomes]
rs10779280	0.93[ASN][1000 genomes]
rs10779282	0.83[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs10779283	0.83[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.84[MEX][hapmap];0.93[ASN][1000 genomes]
rs10863276	0.92[ASN][1000 genomes]
rs11117697	1.00[CEU][hapmap];0.83[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11117701	1.00[ASW][hapmap];0.94[CEU][hapmap];0.83[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11572556	0.83[CHB][hapmap];0.84[CHD][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11572571	1.00[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11572574	1.00[CEU][hapmap];0.83[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11572578	0.83[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.84[MEX][hapmap];0.93[ASN][1000 genomes]
rs11585302	0.83[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs11585678	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11807312	0.83[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs12095761	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12402472	0.81[CHB][hapmap]
rs12402871	0.81[CHB][hapmap];0.84[GIH][hapmap]
rs12410353	0.83[CHB][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12737994	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12743040	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12743159	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12743319	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12745013	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12758273	0.83[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs12758957	0.81[CHB][hapmap];0.91[JPT][hapmap];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1370147	0.83[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs1370148	1.00[CEU][hapmap];0.83[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1436894	0.83[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs1542002	0.90[JPT][hapmap];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1542003	0.81[CHB][hapmap];0.87[GIH][hapmap]
rs1561184	0.92[ASN][1000 genomes]
rs1561185	1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[EUR][1000 genomes]
rs1561186	0.81[CHB][hapmap];0.84[GIH][hapmap]
rs17044178	0.83[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.84[MEX][hapmap];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17044214	0.81[CHB][hapmap]
rs1821788	0.93[ASN][1000 genomes]
rs1898313	0.91[JPT][hapmap]
rs2164616	0.92[ASN][1000 genomes]
rs2263103	0.83[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs2377356	0.95[EUR][1000 genomes]
rs2576251	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2576252	0.83[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs2576254	0.83[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs2576256	0.93[ASN][1000 genomes]
rs2576257	0.93[ASN][1000 genomes]
rs2576261	0.91[CHD][hapmap];0.91[JPT][hapmap]
rs2813680	1.00[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2813681	0.83[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs2813683	0.83[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs2813687	0.93[ASN][1000 genomes]
rs2818802	0.95[CHD][hapmap];0.91[JPT][hapmap]
rs2818810	0.91[JPT][hapmap]
rs2818811	0.91[JPT][hapmap]
rs34063139	0.93[ASN][1000 genomes]
rs36074629	0.93[ASN][1000 genomes]
rs4581330	0.83[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs61817889	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6604648	0.83[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs6656008	0.94[ASW][hapmap];0.83[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];0.91[JPT][hapmap];0.93[LWK][hapmap];0.89[MKK][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6656300	0.83[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs7513033	0.91[CHB][hapmap];0.91[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7516551	0.83[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs7521231	1.00[CEU][hapmap];0.83[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];0.91[JPT][hapmap];0.86[LWK][hapmap];0.95[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7523966	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7532492	0.83[CHB][hapmap];0.91[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7537081	0.83[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs7539722	0.93[ASN][1000 genomes]
rs7548403	0.91[JPT][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7552492	0.83[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.84[MEX][hapmap];0.92[ASN][1000 genomes]
rs920171	0.93[ASN][1000 genomes]
rs9787079	0.81[CHB][hapmap];0.84[GIH][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12086903	BATF3	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217006000-217038000	Weak transcription	Pancreas	Pancrea
2	chr1:217020600-217021200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr1:217020600-217022200	Weak transcription	Fetal Intestine Small	intestine
4	chr1:217020800-217021600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:217020800-217021600	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr1:217020800-217022200	Enhancers	Stomach Smooth Muscle	stomach
7	chr1:217020800-217023400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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