Variant report

Variant	rs9787079
Chromosome Location	chr1:217014065-217014066
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10492952	0.83[CHB][hapmap];0.84[GIH][hapmap];0.80[AMR][1000 genomes]
rs10492953	1.00[CEU][hapmap];0.83[CHB][hapmap];0.84[GIH][hapmap];0.83[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10779282	1.00[CEU][hapmap];0.83[CHB][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10779283	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[GIH][hapmap];0.80[TSI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11117697	0.83[CHB][hapmap];0.87[GIH][hapmap];0.82[AMR][1000 genomes]
rs11117701	0.83[CHB][hapmap];0.84[GIH][hapmap]
rs11572548	0.93[CEU][hapmap]
rs11572556	1.00[CEU][hapmap];0.83[CHB][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11572571	0.83[CHB][hapmap];0.82[AMR][1000 genomes]
rs11572574	0.83[CHB][hapmap];0.84[GIH][hapmap];0.82[AMR][1000 genomes]
rs11572578	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.84[GIH][hapmap];0.83[TSI][hapmap];0.85[YRI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11572581	0.94[CEU][hapmap];0.95[EUR][1000 genomes]
rs11585302	1.00[CEU][hapmap];0.83[CHB][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11585678	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11807312	0.83[CHB][hapmap]
rs12086903	0.81[CHB][hapmap];0.84[GIH][hapmap]
rs12402472	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12402871	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12410353	1.00[CEU][hapmap];0.83[CHB][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12737994	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12743040	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12743159	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12743319	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12745013	0.82[AMR][1000 genomes]
rs12758273	0.83[CHB][hapmap]
rs12758957	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1370147	0.83[CHB][hapmap]
rs1370148	0.83[CHB][hapmap];0.84[GIH][hapmap]
rs1436893	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1436894	0.83[CHB][hapmap]
rs1542002	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1542003	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.94[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1561184	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1561185	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1561186	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17044178	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.84[GIH][hapmap];0.83[TSI][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17044214	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2263103	0.83[CHB][hapmap]
rs2576252	0.83[CHB][hapmap]
rs2576254	0.83[CHB][hapmap]
rs2813680	0.83[CHB][hapmap]
rs2813681	0.83[CHB][hapmap]
rs2813683	0.83[CHB][hapmap]
rs36074629	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4369291	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4581330	0.83[CHB][hapmap]
rs4593893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6604648	0.83[CHB][hapmap]
rs6656008	1.00[CEU][hapmap];0.83[CHB][hapmap];0.84[GIH][hapmap];0.83[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6656300	0.83[CHB][hapmap]
rs67182716	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7513033	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7516551	0.83[CHB][hapmap]
rs7521231	0.83[CHB][hapmap];0.84[GIH][hapmap]
rs7523966	0.82[AMR][1000 genomes]
rs7532492	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7537081	0.83[CHB][hapmap]
rs7548403	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7552492	1.00[CEU][hapmap];0.83[CHB][hapmap];0.84[GIH][hapmap];0.83[TSI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762163	chr1:216982140-217015625	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217004400-217014600	Weak transcription	Fetal Muscle Leg	muscle
2	chr1:217006000-217038000	Weak transcription	Pancreas	Pancrea
3	chr1:217013400-217020400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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