Variant report

Variant	rs1436893
Chromosome Location	chr1:217028195-217028196
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10492953	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10779282	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10779283	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11117697	0.81[AMR][1000 genomes]
rs11572556	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11572571	0.81[AMR][1000 genomes]
rs11572574	0.81[AMR][1000 genomes]
rs11572578	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11572581	0.94[EUR][1000 genomes]
rs11585302	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11585678	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12402472	1.00[ASN][1000 genomes]
rs12402871	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12410353	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12737994	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12743040	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12743159	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12743319	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12745013	0.81[AMR][1000 genomes]
rs12758957	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1542002	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1542003	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1561184	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1561185	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1561186	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17044178	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17044214	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36074629	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4593893	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6656008	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67182716	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7513033	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7523966	0.81[AMR][1000 genomes]
rs7532492	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7548403	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7552492	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9787079	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217006000-217038000	Weak transcription	Pancreas	Pancrea
2	chr1:217022200-217029000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:217026400-217029200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:217026800-217028400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:217027000-217028400	Enhancers	Rectal Smooth Muscle	rectum
6	chr1:217027000-217029400	Enhancers	Fetal Muscle Leg	muscle
7	chr1:217027200-217029000	Weak transcription	Fetal Heart	heart
8	chr1:217027400-217029000	Enhancers	Stomach Smooth Muscle	stomach
9	chr1:217027800-217029400	Enhancers	Colon Smooth Muscle	Colon
10	chr1:217027800-217030200	Enhancers	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links