Variant report

Variant	rs11572581
Chromosome Location	chr1:217011393-217011394
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10492953	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs10779282	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs10779283	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs11572548	1.00[CEU][hapmap]
rs11572556	0.94[CEU][hapmap];0.87[EUR][1000 genomes]
rs11572578	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs11585302	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs11585678	0.87[EUR][1000 genomes]
rs12402871	0.94[CEU][hapmap];0.95[EUR][1000 genomes]
rs12410353	0.94[CEU][hapmap];0.87[EUR][1000 genomes]
rs12737994	0.86[EUR][1000 genomes]
rs12743040	0.87[EUR][1000 genomes]
rs12743159	0.87[EUR][1000 genomes]
rs12743319	0.87[EUR][1000 genomes]
rs12758957	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs1436893	0.94[EUR][1000 genomes]
rs1542002	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs1542003	0.94[CEU][hapmap];0.95[EUR][1000 genomes]
rs1561184	0.84[EUR][1000 genomes]
rs1561186	0.94[CEU][hapmap];0.92[EUR][1000 genomes]
rs17044178	0.94[CEU][hapmap];0.87[EUR][1000 genomes]
rs17044214	0.94[CEU][hapmap];0.94[EUR][1000 genomes]
rs36074629	0.84[EUR][1000 genomes]
rs4369291	0.94[CEU][hapmap]
rs4593893	0.95[EUR][1000 genomes]
rs6656008	0.94[CEU][hapmap];0.87[EUR][1000 genomes]
rs67182716	0.89[EUR][1000 genomes]
rs7513033	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs7532492	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs7548403	0.94[CEU][hapmap];0.87[EUR][1000 genomes]
rs7552492	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs9787079	0.94[CEU][hapmap];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762163	chr1:216982140-217015625	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217004400-217014600	Weak transcription	Fetal Muscle Leg	muscle
2	chr1:217006000-217038000	Weak transcription	Pancreas	Pancrea
3	chr1:217010200-217011800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:217010400-217011600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr1:217010800-217011400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr1:217010800-217011600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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