Variant report

Variant	rs1561184
Chromosome Location	chr1:217007710-217007711
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10492952	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10492953	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10779280	0.99[ASN][1000 genomes]
rs10779282	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10779283	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10863276	0.97[ASN][1000 genomes]
rs11117697	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11117701	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11572556	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11572571	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11572574	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11572578	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11572581	0.84[EUR][1000 genomes]
rs11585302	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11585678	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11807312	0.97[ASN][1000 genomes]
rs12086903	0.92[ASN][1000 genomes]
rs12095761	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12402871	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12410353	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12737994	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12743040	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12743159	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12743319	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12745013	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12758273	1.00[ASN][1000 genomes]
rs12758957	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1370147	0.96[ASN][1000 genomes]
rs1370148	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1436893	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1436894	0.99[ASN][1000 genomes]
rs1542002	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1542003	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1561185	0.81[AMR][1000 genomes]
rs1561186	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17044178	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17044214	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1821788	0.99[ASN][1000 genomes]
rs2164616	0.97[ASN][1000 genomes]
rs2263103	0.99[ASN][1000 genomes]
rs2377356	0.81[ASN][1000 genomes]
rs2576251	0.99[ASN][1000 genomes]
rs2576252	0.99[ASN][1000 genomes]
rs2576254	0.99[ASN][1000 genomes]
rs2576256	0.99[ASN][1000 genomes]
rs2576257	0.99[ASN][1000 genomes]
rs2813680	0.99[ASN][1000 genomes]
rs2813681	0.99[ASN][1000 genomes]
rs2813683	0.99[ASN][1000 genomes]
rs2813687	0.99[ASN][1000 genomes]
rs34063139	0.99[ASN][1000 genomes]
rs36074629	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4581330	0.93[ASN][1000 genomes]
rs4593893	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61817889	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6604648	0.99[ASN][1000 genomes]
rs6656008	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6656300	0.93[ASN][1000 genomes]
rs67182716	0.82[EUR][1000 genomes]
rs7513033	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7516551	0.99[ASN][1000 genomes]
rs7521231	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7523966	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7532492	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7537081	1.00[ASN][1000 genomes]
rs7539722	0.99[ASN][1000 genomes]
rs7548403	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7552492	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs920171	0.99[ASN][1000 genomes]
rs9787079	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762163	chr1:216982140-217015625	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217004400-217014600	Weak transcription	Fetal Muscle Leg	muscle
2	chr1:217004800-217008400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr1:217005600-217009800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr1:217005800-217008000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr1:217006000-217038000	Weak transcription	Pancreas	Pancrea
6	chr1:217007400-217007800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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