Variant report

Variant	rs10780600
Chromosome Location	chr9:85999656-85999657
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85998150..86000418-chr9:86018604..86020788,2	MCF-7	breast:
2	chr9:85997879..86001519-chr9:86002024..86006738,6	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10780599	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10868003	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140061	0.83[EUR][1000 genomes]
rs11140065	0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs12115799	0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs12337675	0.82[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12342540	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13292680	0.87[ASN][1000 genomes]
rs13292829	0.86[ASN][1000 genomes]
rs2183260	0.92[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3860910	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3904188	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3928783	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4084066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4145728	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6559722	0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs7847162	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7853850	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7854453	0.82[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7868589	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85958200-86007600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr9:85998400-85999800	Enhancers	Fetal Brain Male	brain
3	chr9:85998800-86004200	Weak transcription	Left Ventricle	heart
4	chr9:85998800-86008600	Weak transcription	Pancreas	Pancrea
5	chr9:85999000-86000000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr9:85999000-86000000	Enhancers	Fetal Brain Female	brain
7	chr9:85999000-86000000	Enhancers	Fetal Muscle Leg	muscle
8	chr9:85999200-86000000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr9:85999200-86000000	Enhancers	Fetal Muscle Trunk	muscle
10	chr9:85999400-86000400	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr9:85999400-86001200	Enhancers	NHDF-Ad	bronchial
12	chr9:85999400-86008400	Weak transcription	Aorta	Aorta

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