Variant report

Variant	rs7854453
Chromosome Location	chr9:86005280-86005281
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10780599	0.82[CEU][hapmap];0.83[CHB][hapmap];0.83[GIH][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs10780600	0.82[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10868003	0.85[CEU][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11140065	0.83[ASW][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.87[MEX][hapmap];0.92[MKK][hapmap];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12115799	0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12337675	0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs12342540	0.90[ASN][1000 genomes]
rs13292680	0.81[ASN][1000 genomes]
rs2183260	0.83[CHB][hapmap];0.83[ASN][1000 genomes]
rs3860910	0.91[ASN][1000 genomes]
rs3904188	0.83[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs3928783	0.80[ASN][1000 genomes]
rs4084066	0.83[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4145728	0.82[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6559722	1.00[ASW][hapmap];0.94[CHB][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7847162	0.90[ASN][1000 genomes]
rs7853850	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7868589	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85958200-86007600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr9:85998800-86008600	Weak transcription	Pancreas	Pancrea
3	chr9:85999400-86008400	Weak transcription	Aorta	Aorta
4	chr9:86000000-86005800	Weak transcription	Fetal Muscle Leg	muscle
5	chr9:86000000-86006600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr9:86000000-86020600	Weak transcription	Fetal Brain Female	brain
7	chr9:86000400-86005600	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr9:86003400-86006600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr9:86004400-86005400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:86004600-86014200	Weak transcription	Gastric	stomach
11	chr9:86004800-86005800	Weak transcription	Left Ventricle	heart
12	chr9:86005000-86006800	Weak transcription	HepG2	liver
13	chr9:86005200-86005400	Enhancers	Psoas Muscle	Psoas
14	chr9:86005200-86005400	Enhancers	Spleen	Spleen
15	chr9:86005200-86006400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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