Variant report

Variant	rs10868003
Chromosome Location	chr9:86002909-86002910
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85997879..86001519-chr9:86002024..86006738,6	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10780599	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10780600	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140061	0.83[EUR][1000 genomes]
rs11140065	0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs12115799	0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs12337675	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12342540	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13292680	0.87[ASN][1000 genomes]
rs13292829	0.86[ASN][1000 genomes]
rs2183260	0.89[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3860910	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3904188	0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3928783	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4084066	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4145728	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6559722	0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs7847162	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7853850	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7854453	0.85[CEU][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7868589	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85958200-86007600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr9:85998800-86004200	Weak transcription	Left Ventricle	heart
3	chr9:85998800-86008600	Weak transcription	Pancreas	Pancrea
4	chr9:85999400-86008400	Weak transcription	Aorta	Aorta
5	chr9:86000000-86005800	Weak transcription	Fetal Muscle Leg	muscle
6	chr9:86000000-86006600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr9:86000000-86020600	Weak transcription	Fetal Brain Female	brain
8	chr9:86000400-86005600	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr9:86001200-86004400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:86002800-86003000	Enhancers	Gastric	stomach
11	chr9:86002800-86003600	Flanking Active TSS	HepG2	liver

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