Variant report

Variant	rs2183260
Chromosome Location	chr9:85986868-85986869
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85985180..85988135-chr9:86151816..86155066,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000172159	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10119054	0.91[JPT][hapmap]
rs10780599	0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10780600	0.92[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10868003	0.89[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11140056	0.81[JPT][hapmap]
rs11140061	0.82[EUR][1000 genomes]
rs11140065	0.97[CHD][hapmap];0.81[GIH][hapmap]
rs12337675	0.94[CHB][hapmap];0.97[CHD][hapmap];0.83[JPT][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap];0.87[ASN][1000 genomes]
rs12342540	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13292680	0.82[ASN][1000 genomes]
rs13292829	0.81[ASN][1000 genomes]
rs3860910	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3904188	1.00[CHB][hapmap];0.97[CHD][hapmap];0.81[GIH][hapmap];0.83[JPT][hapmap];0.84[TSI][hapmap];0.90[ASN][1000 genomes]
rs3928783	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4084066	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4145728	0.92[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6559722	0.97[CHD][hapmap];0.95[GIH][hapmap];0.80[ASN][1000 genomes]
rs7847162	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7853850	0.83[ASN][1000 genomes]
rs7854453	0.83[CHB][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85937400-85998000	Weak transcription	Aorta	Aorta
2	chr9:85958200-86007600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr9:85977000-85990200	Weak transcription	Right Ventricle	heart
4	chr9:85977400-85994600	Weak transcription	Pancreas	Pancrea
5	chr9:85977600-85990000	Weak transcription	Spleen	Spleen
6	chr9:85981000-85997800	Weak transcription	Left Ventricle	heart
7	chr9:85982000-85987000	Weak transcription	Fetal Muscle Leg	muscle
8	chr9:85982200-85987800	Weak transcription	HepG2	liver
9	chr9:85982400-85987400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:85982400-85987600	Weak transcription	Fetal Stomach	stomach
11	chr9:85982600-85998800	Weak transcription	Ovary	ovary
12	chr9:85983000-85998400	Weak transcription	Fetal Brain Male	brain
13	chr9:85986400-85989200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr9:85986600-85987200	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr9:85986800-85989200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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