Variant report

Variant	rs3928783
Chromosome Location	chr9:85986484-85986485
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10780599	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10780600	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10868003	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11140061	0.82[EUR][1000 genomes]
rs12337675	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12342540	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2183260	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3860910	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3904188	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4084066	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4145728	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7847162	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7853850	0.80[ASN][1000 genomes]
rs7854453	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85937400-85998000	Weak transcription	Aorta	Aorta
2	chr9:85956200-85986600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr9:85958200-86007600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr9:85977000-85990200	Weak transcription	Right Ventricle	heart
5	chr9:85977400-85994600	Weak transcription	Pancreas	Pancrea
6	chr9:85977600-85990000	Weak transcription	Spleen	Spleen
7	chr9:85981000-85997800	Weak transcription	Left Ventricle	heart
8	chr9:85982000-85987000	Weak transcription	Fetal Muscle Leg	muscle
9	chr9:85982200-85987800	Weak transcription	HepG2	liver
10	chr9:85982400-85987400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:85982400-85987600	Weak transcription	Fetal Stomach	stomach
12	chr9:85982600-85998800	Weak transcription	Ovary	ovary
13	chr9:85983000-85998400	Weak transcription	Fetal Brain Male	brain
14	chr9:85986400-85989200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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