Variant report

Variant	rs10792091
Chromosome Location	chr11:57119156-57119157
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:57118779..57121066-chr11:57192252..57194028,2	K562	blood:

Variant related genes	Relation type
ENSG00000134802	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10792086	0.92[ASN][1000 genomes]
rs10792088	0.92[ASN][1000 genomes]
rs10792089	0.92[ASN][1000 genomes]
rs10896598	1.00[ASN][1000 genomes]
rs10896603	0.92[ASN][1000 genomes]
rs10896604	1.00[ASN][1000 genomes]
rs10896605	0.92[ASN][1000 genomes]
rs10896608	1.00[ASN][1000 genomes]
rs11228995	1.00[ASN][1000 genomes]
rs11228997	1.00[ASN][1000 genomes]
rs11229003	1.00[ASN][1000 genomes]
rs11229011	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11602265	0.92[ASN][1000 genomes]
rs11602266	1.00[ASN][1000 genomes]
rs11603691	1.00[ASN][1000 genomes]
rs11607950	1.00[ASN][1000 genomes]
rs12361969	0.82[ASN][1000 genomes]
rs12365472	1.00[ASN][1000 genomes]
rs12576878	0.92[ASN][1000 genomes]
rs1815769	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2230649	0.92[ASN][1000 genomes]
rs34135716	0.92[ASN][1000 genomes]
rs4938863	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4938864	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61888886	1.00[ASN][1000 genomes]
rs61888887	1.00[ASN][1000 genomes]
rs61888888	1.00[ASN][1000 genomes]
rs7106462	0.92[ASN][1000 genomes]
rs7111339	1.00[ASN][1000 genomes]
rs7129491	1.00[ASN][1000 genomes]
rs7951793	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
4	nsv541048	chr11:57076815-57120781	Flanking Active TSS Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57104200-57119200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:57117400-57120200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:57117400-57120400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:57117400-57120400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:57117400-57120400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:57117400-57120600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr11:57117400-57120800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr11:57117400-57122000	Weak transcription	Pancreas	Pancrea
9	chr11:57117600-57119800	Weak transcription	Fetal Brain Male	brain
10	chr11:57117600-57122000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr11:57117600-57126400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:57117600-57140000	Weak transcription	Right Atrium	heart
13	chr11:57117800-57120000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr11:57117800-57120200	Weak transcription	Fetal Muscle Leg	muscle
15	chr11:57117800-57120600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr11:57117800-57120800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr11:57117800-57121000	Weak transcription	Brain Hippocampus Middle	brain
18	chr11:57117800-57122000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr11:57117800-57122000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr11:57118400-57120400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr11:57118800-57119400	ZNF genes & repeats	A549	lung

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