Variant report

Variant	rs1815769
Chromosome Location	chr11:57132459-57132460
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:57127881..57130046-chr11:57132375..57135097,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10792086	0.92[ASN][1000 genomes]
rs10792088	0.92[ASN][1000 genomes]
rs10792089	0.92[ASN][1000 genomes]
rs10792091	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10896598	1.00[ASN][1000 genomes]
rs10896603	0.92[ASN][1000 genomes]
rs10896604	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10896605	0.92[ASN][1000 genomes]
rs10896608	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11228995	1.00[ASN][1000 genomes]
rs11228997	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11229003	1.00[ASN][1000 genomes]
rs11229011	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11602265	0.92[ASN][1000 genomes]
rs11602266	1.00[ASN][1000 genomes]
rs11603691	1.00[ASN][1000 genomes]
rs11606592	0.81[CEU][hapmap]
rs11607950	1.00[ASN][1000 genomes]
rs12361969	0.82[ASN][1000 genomes]
rs12365472	1.00[ASN][1000 genomes]
rs12576878	0.92[ASN][1000 genomes]
rs2230649	0.92[ASN][1000 genomes]
rs34135716	0.92[ASN][1000 genomes]
rs4938863	0.93[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4938864	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61888886	1.00[ASN][1000 genomes]
rs61888887	1.00[ASN][1000 genomes]
rs61888888	1.00[ASN][1000 genomes]
rs7106462	0.92[ASN][1000 genomes]
rs7111339	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7129491	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7951793	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57117600-57140000	Weak transcription	Right Atrium	heart
2	chr11:57127000-57133400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr11:57127800-57132600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:57130800-57132800	Enhancers	K562	blood
5	chr11:57131200-57132800	Enhancers	Pancreas	Pancrea
6	chr11:57131200-57133400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:57131200-57134400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:57131600-57133000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr11:57131800-57132800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr11:57132000-57134000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr11:57132200-57133400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr11:57132200-57133600	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr11:57132200-57133800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr11:57132200-57134000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:57132200-57134000	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr11:57132200-57134200	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr11:57132400-57133000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:57132400-57133200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr11:57132400-57133400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:57132400-57133400	Enhancers	H9 Cell Line	embryonic stem cell
21	chr11:57132400-57133800	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:57132400-57134000	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr11:57132400-57134200	Enhancers	H1 Cell Line	embryonic stem cell
24	chr11:57132400-57137600	Enhancers	Primary hematopoietic stem cells short term culture	blood

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