Variant report

Variant	rs10896603
Chromosome Location	chr11:57084362-57084363
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:57082825..57084947-chr11:57296049..57298062,2	K562	blood:
2	chr11:57060749..57062421-chr11:57082796..57084625,2	MCF-7	breast:
3	chr11:57075786..57078161-chr11:57083290..57085004,2	MCF-7	breast:
4	chr11:57074141..57076695-chr11:57081529..57084399,2	K562	blood:
5	chr11:57059815..57061654-chr11:57084021..57086891,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10792086	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10792088	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10792089	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10792091	0.92[ASN][1000 genomes]
rs10896598	0.92[ASN][1000 genomes]
rs10896604	0.92[ASN][1000 genomes]
rs10896605	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10896608	0.92[ASN][1000 genomes]
rs11228995	0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11228997	0.92[ASN][1000 genomes]
rs11229003	0.92[ASN][1000 genomes]
rs11229011	0.92[ASN][1000 genomes]
rs11602265	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11602266	0.92[ASN][1000 genomes]
rs11603691	0.92[ASN][1000 genomes]
rs11607950	0.92[ASN][1000 genomes]
rs12365472	0.92[ASN][1000 genomes]
rs12576878	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1815769	0.92[ASN][1000 genomes]
rs2230649	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34135716	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4938863	0.84[ASN][1000 genomes]
rs4938864	0.92[ASN][1000 genomes]
rs61888886	0.92[ASN][1000 genomes]
rs61888887	0.92[ASN][1000 genomes]
rs61888888	0.92[ASN][1000 genomes]
rs7106462	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111339	0.92[ASN][1000 genomes]
rs7129491	0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7951793	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
4	nsv541048	chr11:57076815-57120781	Flanking Active TSS Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57079200-57091400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr11:57079400-57089600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:57079400-57091400	Weak transcription	Primary B cells from cord blood	blood
4	chr11:57079600-57084400	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr11:57079600-57084600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:57079600-57084600	Weak transcription	Primary B cells from peripheral blood	blood
7	chr11:57079600-57084800	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:57079600-57085200	Genic enhancers	Fetal Muscle Trunk	muscle
9	chr11:57079600-57086400	Genic enhancers	Gastric	stomach
10	chr11:57079600-57089400	Weak transcription	GM12878-XiMat	blood
11	chr11:57079600-57090800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr11:57079800-57084600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr11:57079800-57084800	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr11:57079800-57085400	Strong transcription	Aorta	Aorta
15	chr11:57079800-57085400	Strong transcription	Fetal Brain Female	brain
16	chr11:57079800-57085600	Genic enhancers	Skeletal Muscle Female	skeletal muscle
17	chr11:57079800-57086200	Genic enhancers	HUES6 Cell Line	embryonic stem cell
18	chr11:57079800-57087400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr11:57079800-57088200	Genic enhancers	Pancreas	Pancrea
20	chr11:57079800-57089000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr11:57079800-57089400	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr11:57079800-57090400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr11:57080000-57085400	Strong transcription	Brain Germinal Matrix	brain
24	chr11:57080000-57085400	Strong transcription	Brain Substantia Nigra	brain
25	chr11:57080000-57085600	Strong transcription	A549	lung
26	chr11:57080000-57085600	Strong transcription	Osteobl	bone
27	chr11:57080000-57088200	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:57080200-57088800	Strong transcription	Dnd41	blood
29	chr11:57080400-57085400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr11:57080400-57085800	Strong transcription	NHDF-Ad	bronchial
31	chr11:57080400-57086400	Genic enhancers	Liver	Liver
32	chr11:57080600-57084400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr11:57080600-57085600	Strong transcription	Placenta Amnion	Placenta Amnion
34	chr11:57080600-57085800	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr11:57081000-57085800	Strong transcription	HMEC	breast
36	chr11:57081000-57085800	Strong transcription	NHEK	skin
37	chr11:57081200-57084400	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr11:57081400-57085800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr11:57081600-57084400	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr11:57081600-57084600	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr11:57081600-57085600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr11:57081800-57084600	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr11:57082000-57084800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr11:57082000-57086200	Genic enhancers	Duodenum Mucosa	Duodenum
45	chr11:57082000-57086800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr11:57082200-57085600	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr11:57082200-57086600	Genic enhancers	Rectal Mucosa Donor 31	rectum
48	chr11:57082400-57084600	Enhancers	Stomach Mucosa	stomach
49	chr11:57082400-57086400	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr11:57082400-57086800	Genic enhancers	Fetal Stomach	stomach

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