Variant report

Variant	rs10793155
Chromosome Location	chr11:76065192-76065193
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76063211..76065578-chr11:76066978..76069387,2	K562	blood:
2	chr11:76064413..76068190-chr11:76071048..76073540,4	MCF-7	breast:
3	chr11:76063904..76066072-chr11:76155439..76156956,2	MCF-7	breast:
4	chr11:76063211..76065578-chr11:76066828..76069387,3	K562	blood:

Variant related genes	Relation type
ENSG00000158636	Chromatin interaction
ENSG00000137492	Chromatin interaction
ENSG00000255135	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10736804	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793152	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10793154	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899211	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945067	0.83[EUR][1000 genomes]
rs4945068	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4945069	0.83[EUR][1000 genomes]
rs4945071	0.81[AFR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4945072	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4945073	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4945074	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4945075	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4945076	0.86[EUR][1000 genomes]
rs7126625	0.84[EUR][1000 genomes]
rs7127175	0.83[EUR][1000 genomes]
rs7924921	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521451	chr11:76053527-76087844	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76051200-76065200	Weak transcription	Right Ventricle	heart
2	chr11:76051200-76066200	Weak transcription	NHDF-Ad	bronchial
3	chr11:76052600-76065200	Weak transcription	HSMM	muscle
4	chr11:76054600-76065600	Weak transcription	Fetal Kidney	kidney
5	chr11:76054600-76080600	Weak transcription	Psoas Muscle	Psoas
6	chr11:76055400-76065200	Weak transcription	HepG2	liver
7	chr11:76056800-76080600	Weak transcription	Small Intestine	intestine
8	chr11:76058600-76065800	Weak transcription	Brain Germinal Matrix	brain
9	chr11:76058800-76071400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr11:76059000-76067200	Weak transcription	HSMMtube	muscle
11	chr11:76059000-76082000	Weak transcription	HMEC	breast
12	chr11:76059400-76065200	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr11:76059600-76065400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr11:76059800-76065200	Weak transcription	Fetal Heart	heart
15	chr11:76059800-76065800	Weak transcription	Colon Smooth Muscle	Colon
16	chr11:76060200-76069000	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr11:76060400-76065200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:76060400-76067000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:76060600-76065200	Weak transcription	Pancreas	Pancrea
20	chr11:76061600-76065200	Strong transcription	Duodenum Mucosa	Duodenum
21	chr11:76061600-76067800	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr11:76062400-76065200	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr11:76062600-76079200	Weak transcription	Stomach Mucosa	stomach
24	chr11:76062800-76068400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr11:76063000-76065800	Weak transcription	Brain Cingulate Gyrus	brain
26	chr11:76063000-76069400	Weak transcription	Fetal Brain Male	brain
27	chr11:76063000-76077000	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr11:76063600-76065400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr11:76063600-76066800	Strong transcription	Stomach Smooth Muscle	stomach
30	chr11:76063600-76067400	Strong transcription	HUES48 Cell Line	embryonic stem cell
31	chr11:76063600-76067400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr11:76063600-76068800	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr11:76063800-76065200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr11:76063800-76065200	Strong transcription	Placenta	Placenta
35	chr11:76063800-76065200	Strong transcription	Rectal Mucosa Donor 31	rectum
36	chr11:76063800-76065200	Strong transcription	Hela-S3	cervix
37	chr11:76063800-76065400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr11:76063800-76066200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr11:76063800-76066400	ZNF genes & repeats	Primary T cells from cord blood	blood
40	chr11:76063800-76066600	Strong transcription	NH-A	brain
41	chr11:76063800-76067400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr11:76063800-76067800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr11:76063800-76067800	Strong transcription	Osteobl	bone
44	chr11:76063800-76068400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr11:76064000-76065200	Strong transcription	Cortex derived primary cultured neurospheres	brain
46	chr11:76064000-76065200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr11:76064000-76065600	Strong transcription	Brain Hippocampus Middle	brain
48	chr11:76064000-76065800	Strong transcription	Brain Anterior Caudate	brain
49	chr11:76064000-76066200	Strong transcription	Brain Substantia Nigra	brain
50	chr11:76064000-76067000	Strong transcription	iPS-18 Cell Line	embryonic stem cell

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