Variant report

Variant	rs4945069
Chromosome Location	chr11:76038170-76038171
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10736804	0.88[CEU][hapmap];0.95[GIH][hapmap];0.86[MKK][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs10793152	0.86[EUR][1000 genomes]
rs10793154	0.82[EUR][1000 genomes]
rs10793155	0.83[EUR][1000 genomes]
rs10899209	0.88[CEU][hapmap];0.95[GIH][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs10899211	0.80[EUR][1000 genomes]
rs4944105	0.87[CEU][hapmap]
rs4945067	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4945068	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4945071	0.87[EUR][1000 genomes]
rs4945072	0.87[EUR][1000 genomes]
rs4945073	0.87[EUR][1000 genomes]
rs4945074	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4945075	0.83[EUR][1000 genomes]
rs4945076	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7126625	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.83[MKK][hapmap];0.86[TSI][hapmap];0.80[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7127175	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7924921	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv989053	chr11:76027846-76039082	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv524020	chr11:76033374-76047793	Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76033400-76038600	Weak transcription	Spleen	Spleen
2	chr11:76033600-76038400	Weak transcription	Right Atrium	heart
3	chr11:76033600-76040200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:76033800-76040000	Weak transcription	Fetal Lung	lung
5	chr11:76034200-76038400	Weak transcription	Placenta	Placenta
6	chr11:76034200-76038400	Weak transcription	Left Ventricle	heart
7	chr11:76034200-76038600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:76034200-76038600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr11:76034200-76038800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:76034200-76040200	Weak transcription	Adipose Nuclei	Adipose
11	chr11:76034600-76040000	Weak transcription	Fetal Heart	heart
12	chr11:76035400-76038200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr11:76035400-76038200	Weak transcription	K562	blood
14	chr11:76035400-76038800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr11:76035800-76040400	Weak transcription	Fetal Intestine Small	intestine
16	chr11:76036400-76038200	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr11:76037800-76038200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr11:76038000-76039600	Enhancers	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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