Variant report

Variant	rs10899211
Chromosome Location	chr11:76089768-76089769
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76089758..76095735-chr11:76153234..76157826,15	MCF-7	breast:

Variant related genes	Relation type
ENSG00000158636	Chromatin interaction
ENSG00000255135	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10736804	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793152	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10793154	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793155	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899209	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945067	0.80[EUR][1000 genomes]
rs4945068	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4945069	0.80[EUR][1000 genomes]
rs4945071	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4945072	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4945073	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4945074	0.84[EUR][1000 genomes]
rs4945075	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4945076	0.85[EUR][1000 genomes]
rs7126625	0.81[EUR][1000 genomes]
rs7127175	0.81[EUR][1000 genomes]
rs7924921	0.82[EUR][1000 genomes]

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76066400-76090000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:76066600-76090000	Weak transcription	Fetal Brain Female	brain
3	chr11:76067600-76090400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:76067600-76091000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:76067800-76090000	Weak transcription	Lung	lung
6	chr11:76072200-76090400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr11:76073600-76090000	Weak transcription	Primary B cells from cord blood	blood
8	chr11:76076400-76089800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr11:76076800-76089800	Weak transcription	Fetal Muscle Trunk	muscle
10	chr11:76077000-76090400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:76077000-76090400	Weak transcription	Fetal Muscle Leg	muscle
12	chr11:76077600-76090000	Weak transcription	Placenta	Placenta
13	chr11:76081000-76090400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr11:76081200-76090400	Weak transcription	Liver	Liver
15	chr11:76081200-76090400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr11:76081200-76090400	Weak transcription	Spleen	Spleen
17	chr11:76082400-76090400	Weak transcription	Colon Smooth Muscle	Colon
18	chr11:76082400-76091000	Weak transcription	Aorta	Aorta
19	chr11:76082600-76090200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr11:76082600-76090200	Weak transcription	Brain Hippocampus Middle	brain
21	chr11:76082600-76090200	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr11:76082600-76090400	Weak transcription	Right Ventricle	heart
23	chr11:76082800-76089800	Weak transcription	HepG2	liver
24	chr11:76082800-76090000	Weak transcription	Primary T cells from cord blood	blood
25	chr11:76082800-76090000	Weak transcription	Fetal Intestine Small	intestine
26	chr11:76082800-76090000	Weak transcription	HMEC	breast
27	chr11:76082800-76090000	Weak transcription	NHEK	skin
28	chr11:76082800-76090200	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr11:76082800-76090200	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr11:76082800-76090200	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr11:76082800-76090400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr11:76082800-76090400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr11:76082800-76090400	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr11:76083000-76090000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr11:76083000-76090000	Weak transcription	HUVEC	blood vessel
36	chr11:76083400-76089800	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr11:76083400-76090400	Weak transcription	A549	lung
38	chr11:76084000-76089800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr11:76085600-76090800	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr11:76085800-76091000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
41	chr11:76086200-76089800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr11:76086200-76090200	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr11:76086400-76089800	Weak transcription	Right Atrium	heart
44	chr11:76086400-76090200	Weak transcription	NHDF-Ad	bronchial
45	chr11:76086400-76090400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr11:76086400-76090400	Weak transcription	Esophagus	oesophagus
47	chr11:76086400-76090600	Weak transcription	Gastric	stomach
48	chr11:76086600-76090200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr11:76086800-76090400	Weak transcription	Osteobl	bone
50	chr11:76087200-76090000	Weak transcription	Hela-S3	cervix

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