Variant report

Variant	rs10798428
Chromosome Location	chr1:175944366-175944367
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:175943129..175946013-chr1:175947654..175950416,2	K562	blood:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10436864	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10494495	0.89[YRI][hapmap]
rs10737315	0.89[ASN][1000 genomes]
rs10753111	0.83[ASN][1000 genomes]
rs10753112	0.88[YRI][hapmap]
rs10753117	0.88[YRI][hapmap]
rs10798425	0.88[YRI][hapmap]
rs10798427	0.86[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10798432	0.80[YRI][hapmap];0.81[ASN][1000 genomes]
rs10798434	0.89[YRI][hapmap]
rs10913109	0.82[AMR][1000 genomes]
rs10913117	0.88[YRI][hapmap]
rs1155229	0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11576862	0.82[EUR][1000 genomes]
rs12029090	0.89[YRI][hapmap]
rs12038027	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12404181	0.80[EUR][1000 genomes]
rs1357337	0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17351808	0.84[EUR][1000 genomes]
rs1770643	0.82[AMR][1000 genomes]
rs2481627	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2481634	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2481641	0.85[YRI][hapmap]
rs2481647	0.86[YRI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2481651	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2481657	0.86[YRI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2502822	0.85[YRI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2502826	0.85[YRI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2502830	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2502832	0.85[YRI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2502834	1.00[YRI][hapmap]
rs2502835	1.00[YRI][hapmap]
rs2502836	0.85[YRI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2502841	0.84[YRI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2502842	0.82[AMR][1000 genomes]
rs2502847	0.82[AMR][1000 genomes]
rs2861630	0.84[EUR][1000 genomes]
rs4129061	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4307526	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4314844	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4409605	0.89[YRI][hapmap]
rs4460596	0.92[EUR][1000 genomes]
rs4601543	0.84[EUR][1000 genomes]
rs4603086	0.82[AMR][1000 genomes]
rs4652143	0.87[ASN][1000 genomes]
rs471534	0.82[AMR][1000 genomes]
rs553852	0.82[AMR][1000 genomes]
rs56367284	0.82[AMR][1000 genomes]
rs60964243	0.91[EUR][1000 genomes]
rs61186664	0.84[EUR][1000 genomes]
rs611883	0.82[AMR][1000 genomes]
rs61820953	0.91[EUR][1000 genomes]
rs61820960	0.88[EUR][1000 genomes]
rs61820965	0.84[EUR][1000 genomes]
rs61820968	0.84[EUR][1000 genomes]
rs61821029	0.82[AMR][1000 genomes]
rs61822767	0.88[EUR][1000 genomes]
rs6425367	0.89[ASN][1000 genomes]
rs6425368	0.86[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6661828	0.89[ASN][1000 genomes]
rs6678628	0.89[YRI][hapmap]
rs6678812	0.88[YRI][hapmap]
rs6680309	0.86[EUR][1000 genomes]
rs6684747	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6687043	0.88[YRI][hapmap];0.89[ASN][1000 genomes]
rs6688211	0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6704509	0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs704827	0.84[AMR][1000 genomes]
rs74127150	0.86[EUR][1000 genomes]
rs74127154	0.91[EUR][1000 genomes]
rs7517351	0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7524972	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7537435	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7537480	0.92[ASN][1000 genomes]
rs7539247	0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7545043	0.86[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7545639	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7552181	0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7553184	0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7554913	0.85[EUR][1000 genomes]
rs9783047	0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823794	chr1:175869554-176311778	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175874400-175945600	Weak transcription	A549	lung
2	chr1:175897000-175953000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr1:175897600-175953200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:175897800-175952400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:175898600-175953200	Weak transcription	Pancreas	Pancrea
6	chr1:175899200-175953200	Weak transcription	Esophagus	oesophagus
7	chr1:175903400-175951400	Weak transcription	K562	blood
8	chr1:175904200-175956200	Weak transcription	Psoas Muscle	Psoas
9	chr1:175904600-175953000	Weak transcription	Right Ventricle	heart
10	chr1:175905000-175946800	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr1:175906400-175944800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr1:175906400-175952400	Weak transcription	Spleen	Spleen
13	chr1:175906400-175962600	Weak transcription	NH-A	brain
14	chr1:175906800-175952000	Weak transcription	Stomach Smooth Muscle	stomach
15	chr1:175907400-175950600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr1:175907800-175945400	Weak transcription	Small Intestine	intestine
17	chr1:175907800-175945600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr1:175908000-175959400	Weak transcription	NHEK	skin
19	chr1:175909400-175948000	Weak transcription	Colon Smooth Muscle	Colon
20	chr1:175911200-175947600	Weak transcription	Brain Hippocampus Middle	brain
21	chr1:175911200-175950400	Weak transcription	Fetal Heart	heart
22	chr1:175916400-175952200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr1:175917600-175953000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr1:175919000-175947800	Weak transcription	Brain Germinal Matrix	brain
25	chr1:175921400-175951200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr1:175922000-175952000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr1:175924600-175953200	Weak transcription	Gastric	stomach
28	chr1:175924600-175953200	Weak transcription	HepG2	liver
29	chr1:175924800-175947600	Weak transcription	Rectal Smooth Muscle	rectum
30	chr1:175925000-175951800	Weak transcription	Brain Anterior Caudate	brain
31	chr1:175927000-175951200	Weak transcription	Fetal Brain Male	brain
32	chr1:175930200-175947600	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr1:175930400-175945400	Weak transcription	Aorta	Aorta
34	chr1:175930400-175947000	Weak transcription	Fetal Muscle Trunk	muscle
35	chr1:175930400-175951800	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr1:175930400-175952200	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr1:175930600-175951400	Weak transcription	Fetal Kidney	kidney
38	chr1:175930800-175947600	Weak transcription	Fetal Stomach	stomach
39	chr1:175930800-175949600	Weak transcription	Ovary	ovary
40	chr1:175934200-175950400	Weak transcription	GM12878-XiMat	blood
41	chr1:175936600-175946600	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr1:175937400-175951400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr1:175937800-175946400	Weak transcription	NHLF	lung
44	chr1:175938000-175951800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr1:175938200-175947600	Weak transcription	Brain Substantia Nigra	brain
46	chr1:175938200-175951800	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr1:175938400-175945600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr1:175938400-175950200	Weak transcription	HSMMtube	muscle
49	chr1:175938600-175945200	Weak transcription	Osteobl	bone
50	chr1:175938800-175950000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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