The 2.0 version of rSNPBase

Variant report

Variant rs12038027
Chromosome Location chr1:175944580-175944581
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:115 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:175874400-175945600 Weak transcription A549 lung
2 chr1:175897000-175953000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
3 chr1:175897600-175953200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
4 chr1:175897800-175952400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
5 chr1:175898600-175953200 Weak transcription Pancreas Pancrea
6 chr1:175899200-175953200 Weak transcription Esophagus oesophagus
7 chr1:175903400-175951400 Weak transcription K562 blood
8 chr1:175904200-175956200 Weak transcription Psoas Muscle Psoas
9 chr1:175904600-175953000 Weak transcription Right Ventricle heart
10 chr1:175905000-175946800 Strong transcription Monocytes-CD14+_RO01746 blood
11 chr1:175906400-175944800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
12 chr1:175906400-175952400 Weak transcription Spleen Spleen
13 chr1:175906400-175962600 Weak transcription NH-A brain
14 chr1:175906800-175952000 Weak transcription Stomach Smooth Muscle stomach
15 chr1:175907400-175950600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
16 chr1:175907800-175945400 Weak transcription Small Intestine intestine
17 chr1:175907800-175945600 Weak transcription Muscle Satellite Cultured Cells --
18 chr1:175908000-175959400 Weak transcription NHEK skin
19 chr1:175909400-175948000 Weak transcription Colon Smooth Muscle Colon
20 chr1:175911200-175947600 Weak transcription Brain Hippocampus Middle brain
21 chr1:175911200-175950400 Weak transcription Fetal Heart heart
22 chr1:175916400-175952200 Weak transcription Primary T killer naive cells fromperipheralblood blood
23 chr1:175917600-175953000 Weak transcription Primary T killer memory cells from peripheral blood blood
24 chr1:175919000-175947800 Weak transcription Brain Germinal Matrix brain
25 chr1:175921400-175951200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
26 chr1:175922000-175952000 Weak transcription Primary T helper naive cells from peripheral blood blood
27 chr1:175924600-175953200 Weak transcription Gastric stomach
28 chr1:175924600-175953200 Weak transcription HepG2 liver
29 chr1:175924800-175947600 Weak transcription Rectal Smooth Muscle rectum
30 chr1:175925000-175951800 Weak transcription Brain Anterior Caudate brain
31 chr1:175927000-175951200 Weak transcription Fetal Brain Male brain
32 chr1:175930200-175947600 Weak transcription Brain Inferior Temporal Lobe brain
33 chr1:175930400-175945400 Weak transcription Aorta Aorta
34 chr1:175930400-175947000 Weak transcription Fetal Muscle Trunk muscle
35 chr1:175930400-175951800 Weak transcription Skeletal Muscle Female skeletal muscle
36 chr1:175930400-175952200 Weak transcription H9 Cell Line embryonic stem cell
37 chr1:175930600-175951400 Weak transcription Fetal Kidney kidney
38 chr1:175930800-175947600 Weak transcription Fetal Stomach stomach
39 chr1:175930800-175949600 Weak transcription Ovary ovary
40 chr1:175934200-175950400 Weak transcription GM12878-XiMat blood
41 chr1:175936600-175946600 Strong transcription Primary monocytes fromperipheralblood blood
42 chr1:175937400-175951400 Weak transcription ES-WA7 Cell Line embryonic stem cell
43 chr1:175937800-175946400 Weak transcription NHLF lung
44 chr1:175938000-175951800 Weak transcription iPS-18 Cell Line embryonic stem cell
45 chr1:175938200-175947600 Weak transcription Brain Substantia Nigra brain
46 chr1:175938200-175951800 Weak transcription H1 Cell Line embryonic stem cell
47 chr1:175938400-175945600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
48 chr1:175938400-175950200 Weak transcription HSMMtube muscle
49 chr1:175938600-175945200 Weak transcription Osteobl bone
50 chr1:175938800-175950000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain

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Last update: Aug 31, 2015