The 2.0 version of rSNPBase

Variant report

Variant rs10798433
Chromosome Location chr1:175952791-175952792
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:117 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:175897000-175953000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
2 chr1:175897600-175953200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
3 chr1:175898600-175953200 Weak transcription Pancreas Pancrea
4 chr1:175899200-175953200 Weak transcription Esophagus oesophagus
5 chr1:175904200-175956200 Weak transcription Psoas Muscle Psoas
6 chr1:175904600-175953000 Weak transcription Right Ventricle heart
7 chr1:175906400-175962600 Weak transcription NH-A brain
8 chr1:175908000-175959400 Weak transcription NHEK skin
9 chr1:175917600-175953000 Weak transcription Primary T killer memory cells from peripheral blood blood
10 chr1:175924600-175953200 Weak transcription Gastric stomach
11 chr1:175924600-175953200 Weak transcription HepG2 liver
12 chr1:175940400-175953800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
13 chr1:175941000-175953200 Weak transcription Brain Cingulate Gyrus brain
14 chr1:175941200-175952800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
15 chr1:175941200-175953200 Weak transcription Lung lung
16 chr1:175945800-175953400 Weak transcription Aorta Aorta
17 chr1:175946000-175996000 Weak transcription HMEC breast
18 chr1:175947600-175952800 Strong transcription Monocytes-CD14+_RO01746 blood
19 chr1:175948200-175952800 Weak transcription Rectal Smooth Muscle rectum
20 chr1:175948200-175957400 Weak transcription Brain Substantia Nigra brain
21 chr1:175948200-175961400 Weak transcription NHLF lung
22 chr1:175948400-175953400 Weak transcription Colon Smooth Muscle Colon
23 chr1:175948600-175953400 Weak transcription HUVEC blood vessel
24 chr1:175949200-175953400 Strong transcription Primary T cells from cord blood blood
25 chr1:175949200-175958600 Strong transcription Primary neutrophils fromperipheralblood blood
26 chr1:175949200-175958600 Strong transcription Primary T cells fromperipheralblood blood
27 chr1:175949400-175957000 Weak transcription Osteobl bone
28 chr1:175949600-175954800 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
29 chr1:175949800-175954800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
30 chr1:175950000-175952800 Strong transcription Primary T helper cells PMA-I stimulated --
31 chr1:175950000-175954000 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
32 chr1:175950000-175954200 ZNF genes & repeats Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
33 chr1:175950000-175961200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
34 chr1:175950200-175952800 Strong transcription Sigmoid Colon Sigmoid Colon
35 chr1:175950200-175953000 ZNF genes & repeats Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
36 chr1:175950200-175955400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
37 chr1:175950200-175956400 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
38 chr1:175950400-175954800 ZNF genes & repeats Primary B cells from cord blood blood
39 chr1:175950400-175955000 ZNF genes & repeats iPS-20b Cell Line embryonic stem cell
40 chr1:175950400-175955000 ZNF genes & repeats GM12878-XiMat blood
41 chr1:175950600-175953200 ZNF genes & repeats Fetal Lung lung
42 chr1:175950600-175953600 Strong transcription Rectal Mucosa Donor 29 rectum
43 chr1:175950600-175954800 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
44 chr1:175950800-175952800 Strong transcription Duodenum Smooth Muscle Duodenum
45 chr1:175950800-175953800 ZNF genes & repeats Liver Liver
46 chr1:175951000-175952800 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
47 chr1:175951000-175953800 ZNF genes & repeats Adipose Nuclei Adipose
48 chr1:175951000-175954000 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
49 chr1:175951000-175955000 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
50 chr1:175951200-175952800 Strong transcription Foreskin Melanocyte Primary Cells skin01 Skin

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Last update: Aug 31, 2015