The 2.0 version of rSNPBase

Variant report

Variant rs60086820
Chromosome Location chr1:175979892-175979893
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:104 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:175946000-175996000 Weak transcription HMEC breast
2 chr1:175953800-175999600 Weak transcription Colonic Mucosa Colon
3 chr1:175954000-175987800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr1:175957000-175981200 Weak transcription Primary T helper naive cells fromperipheralblood blood
5 chr1:175957800-176022000 Weak transcription Primary T helper naive cells from peripheral blood blood
6 chr1:175958000-175987800 Weak transcription Fetal Thymus thymus
7 chr1:175958800-175980600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
8 chr1:175971400-175981200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
9 chr1:175971600-175981200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
10 chr1:175973600-176003400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
11 chr1:175974000-176003000 Weak transcription NH-A brain
12 chr1:175974400-175988200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
13 chr1:175974600-175981800 Weak transcription Stomach Smooth Muscle stomach
14 chr1:175974600-175988800 Weak transcription Pancreas Pancrea
15 chr1:175974600-176014200 Weak transcription Colon Smooth Muscle Colon
16 chr1:175975400-176003400 Weak transcription NHLF lung
17 chr1:175975600-175981200 Weak transcription Lung lung
18 chr1:175975600-175981400 Weak transcription Primary T helper cells PMA-I stimulated --
19 chr1:175975600-175988400 Weak transcription Placenta Amnion Placenta Amnion
20 chr1:175975800-175980600 Weak transcription Primary T regulatory cells fromperipheralblood blood
21 chr1:175975800-175988800 Weak transcription Ovary ovary
22 chr1:175975800-176016200 Weak transcription HSMMtube muscle
23 chr1:175976000-175981600 Weak transcription Breast Myoepithelial Primary Cells Breast
24 chr1:175976400-175981000 Weak transcription Primary B cells from peripheral blood blood
25 chr1:175976400-175981000 Weak transcription Duodenum Smooth Muscle Duodenum
26 chr1:175976400-175996000 Weak transcription HUVEC blood vessel
27 chr1:175976400-176014400 Weak transcription Brain Angular Gyrus brain
28 chr1:175976600-176009400 Weak transcription Fetal Adrenal Gland Adrenal Gland
29 chr1:175976800-176046000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
30 chr1:175977400-175980000 Strong transcription Primary T helper cells fromperipheralblood blood
31 chr1:175977400-175982200 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr1:175977600-175980800 Weak transcription Duodenum Mucosa Duodenum
33 chr1:175977600-175981000 Weak transcription Rectal Mucosa Donor 31 rectum
34 chr1:175977600-175988000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
35 chr1:175977800-175980800 ZNF genes & repeats Primary T cells from cord blood blood
36 chr1:175978200-175980000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
37 chr1:175978200-175981400 Weak transcription Primary T cells fromperipheralblood blood
38 chr1:175978200-175985200 Strong transcription Primary monocytes fromperipheralblood blood
39 chr1:175978200-175985200 Weak transcription Fetal Heart heart
40 chr1:175978200-176001000 Weak transcription Muscle Satellite Cultured Cells --
41 chr1:175978200-176003600 Weak transcription Small Intestine intestine
42 chr1:175978200-176007400 Weak transcription Brain Germinal Matrix brain
43 chr1:175978200-176050600 Weak transcription Aorta Aorta
44 chr1:175978400-175980600 Weak transcription iPS-20b Cell Line embryonic stem cell
45 chr1:175978400-175980600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
46 chr1:175978400-175980600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
47 chr1:175978400-175980600 Weak transcription Adipose Nuclei Adipose
48 chr1:175978400-175980800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
49 chr1:175978400-175980800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
50 chr1:175978400-175981000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived

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Last update: Aug 31, 2015