Variant report

Variant	rs4652155
Chromosome Location	chr1:176183146-176183147
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:176178997..176181795-chr1:176182441..176184646,3	MCF-7	breast:
2	chr1:176182002..176183788-chr1:176187433..176190030,2	K562	blood:
3	chr1:176175244..176178958-chr1:176179061..176187498,12	MCF-7	breast:
4	chr1:176182122..176184952-chr1:176354424..176356281,2	K562	blood:

Variant related genes	Relation type
ENSG00000143207	Chromatin interaction
ENSG00000236021	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10158829	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10913150	0.81[ASN][1000 genomes]
rs11804926	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11806468	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11809136	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11809835	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12239888	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13328721	1.00[EUR][1000 genomes]
rs16849522	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16849571	0.97[ASN][1000 genomes]
rs16849645	1.00[EUR][1000 genomes]
rs16849697	0.83[EUR][1000 genomes]
rs16849735	0.85[CHB][hapmap]
rs16849829	1.00[EUR][1000 genomes]
rs1831447	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2039232	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2136545	1.00[EUR][1000 genomes]
rs2481639	0.94[ASN][1000 genomes]
rs2481653	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2481660	0.88[ASN][1000 genomes]
rs2502824	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2502825	0.82[ASN][1000 genomes]
rs3845368	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4650936	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4652142	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4652143	0.82[CHB][hapmap]
rs4652144	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4652145	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4652148	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4652150	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4652151	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4652152	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4652154	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4652170	1.00[EUR][1000 genomes]
rs4652174	1.00[EUR][1000 genomes]
rs4652176	1.00[EUR][1000 genomes]
rs533403	0.81[ASN][1000 genomes]
rs55826684	1.00[EUR][1000 genomes]
rs559341	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs55969691	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55979360	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56981673	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57395528	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs57469471	0.85[ASN][1000 genomes]
rs580978	0.85[CHB][hapmap];0.81[ASN][1000 genomes]
rs58178699	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58305404	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58325269	0.94[ASN][1000 genomes]
rs58408024	1.00[EUR][1000 genomes]
rs58743849	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59276566	1.00[EUR][1000 genomes]
rs59373738	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs598177	0.94[ASN][1000 genomes]
rs599326	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs60086820	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs602933	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs61451700	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6672278	0.84[ASN][1000 genomes]
rs704825	0.94[ASN][1000 genomes]
rs704830	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs704831	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs73038827	0.93[AMR][1000 genomes]
rs73038833	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73040925	0.84[ASN][1000 genomes]
rs73040940	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73040951	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73042718	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73042723	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73042728	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73042741	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73042749	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73042795	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73042800	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74127189	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs74127190	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74129027	1.00[EUR][1000 genomes]
rs74129030	1.00[EUR][1000 genomes]
rs74129032	1.00[EUR][1000 genomes]
rs74129041	1.00[EUR][1000 genomes]
rs7521561	1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7525001	0.85[CHB][hapmap]
rs7543882	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs791800	0.81[ASN][1000 genomes]
rs796933	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9792842	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823794	chr1:175869554-176311778	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv872563	chr1:175949646-176184625	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:176177600-176198600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr1:176178200-176189400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:176178200-176193800	Weak transcription	Pancreas	Pancrea

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