Variant report

Variant	rs16849735
Chromosome Location	chr1:176275821-176275822
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:176272160..176273761-chr1:176275482..176277038,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10798449	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10913150	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10913158	0.82[ASN][1000 genomes]
rs11801582	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12125604	0.90[CEU][hapmap];0.88[EUR][1000 genomes]
rs12126441	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs12137387	0.89[EUR][1000 genomes]
rs12140384	0.91[EUR][1000 genomes]
rs12143236	0.88[EUR][1000 genomes]
rs12407844	0.86[EUR][1000 genomes]
rs16849645	0.95[ASN][1000 genomes]
rs16849697	1.00[ASN][1000 genomes]
rs16849763	0.85[ASN][1000 genomes]
rs2039231	1.00[JPT][hapmap]
rs2136545	1.00[ASN][1000 genomes]
rs2481627	1.00[JPT][hapmap]
rs2502841	1.00[JPT][hapmap]
rs2502842	1.00[JPT][hapmap]
rs2502847	0.82[ASN][1000 genomes]
rs41378151	0.88[EUR][1000 genomes]
rs4650938	1.00[ASN][1000 genomes]
rs4652154	0.85[CHB][hapmap]
rs4652155	0.85[CHB][hapmap]
rs471534	0.85[ASN][1000 genomes]
rs533403	0.87[ASN][1000 genomes]
rs553852	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs56367284	0.82[ASN][1000 genomes]
rs580978	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs58715931	0.86[EUR][1000 genomes]
rs59276566	1.00[ASN][1000 genomes]
rs60617532	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs611883	0.82[ASN][1000 genomes]
rs61821029	0.82[ASN][1000 genomes]
rs61821081	0.86[EUR][1000 genomes]
rs704827	0.82[ASN][1000 genomes]
rs704832	0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7525001	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs791744	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs791795	0.81[ASN][1000 genomes]
rs791800	0.87[ASN][1000 genomes]
rs791801	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823794	chr1:175869554-176311778	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv525586	chr1:176224746-176277052	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1008833	chr1:176232985-176276375	Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv548247	chr1:176233932-176277052	Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links