The 2.0 version of rSNPBase

Variant report

Variant rs791800
Chromosome Location chr1:176171800-176171801
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:78 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:176127000-176174000 Weak transcription Colon Smooth Muscle Colon
2 chr1:176128000-176175200 Weak transcription Esophagus oesophagus
3 chr1:176137400-176173000 Weak transcription Right Ventricle heart
4 chr1:176144000-176172800 Weak transcription HMEC breast
5 chr1:176144400-176173400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
6 chr1:176144800-176172800 Weak transcription Rectal Mucosa Donor 29 rectum
7 chr1:176145000-176173200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
8 chr1:176146000-176173000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
9 chr1:176150600-176173000 Weak transcription Hela-S3 cervix
10 chr1:176151800-176173000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
11 chr1:176152000-176173000 Weak transcription Thymus Thymus
12 chr1:176153200-176173000 Weak transcription Primary hematopoietic stem cells blood
13 chr1:176153600-176173000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
14 chr1:176153600-176173000 Weak transcription HSMM muscle
15 chr1:176156000-176172600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
16 chr1:176161600-176173800 Weak transcription HUVEC blood vessel
17 chr1:176161800-176172400 Weak transcription Sigmoid Colon Sigmoid Colon
18 chr1:176163000-176173400 Weak transcription Fetal Thymus thymus
19 chr1:176163600-176173000 Enhancers Primary T helper cells PMA-I stimulated --
20 chr1:176164200-176172800 Weak transcription Adipose Nuclei Adipose
21 chr1:176164200-176173200 Weak transcription Brain Germinal Matrix brain
22 chr1:176166000-176173000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
23 chr1:176166000-176175400 Weak transcription Spleen Spleen
24 chr1:176166600-176173000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
25 chr1:176166600-176173000 Weak transcription Right Atrium heart
26 chr1:176168000-176174000 Weak transcription ES-WA7 Cell Line embryonic stem cell
27 chr1:176168400-176172600 Enhancers Primary T helper naive cells fromperipheralblood blood
28 chr1:176168400-176173400 Enhancers Primary neutrophils fromperipheralblood blood
29 chr1:176168800-176173000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
30 chr1:176168800-176174600 Enhancers Primary T helper memory cells from peripheral blood 2 blood
31 chr1:176169000-176173000 Weak transcription Fetal Intestine Large intestine
32 chr1:176169000-176173000 Weak transcription Psoas Muscle Psoas
33 chr1:176169000-176173000 Weak transcription Skeletal Muscle Male skeletal muscle
34 chr1:176169000-176173800 Weak transcription Ovary ovary
35 chr1:176169400-176173000 Weak transcription Rectal Smooth Muscle rectum
36 chr1:176169600-176172800 Weak transcription Primary hematopoietic stem cells short term culture blood
37 chr1:176169600-176174400 Enhancers Primary T helper cells fromperipheralblood blood
38 chr1:176169800-176172600 Weak transcription Duodenum Smooth Muscle Duodenum
39 chr1:176169800-176172800 Weak transcription Primary T killer memory cells from peripheral blood blood
40 chr1:176169800-176173000 Weak transcription Breast Myoepithelial Primary Cells Breast
41 chr1:176169800-176173000 Weak transcription Primary T helper naive cells from peripheral blood blood
42 chr1:176169800-176173000 Weak transcription Brain Anterior Caudate brain
43 chr1:176169800-176173800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
44 chr1:176169800-176173800 Weak transcription Brain Angular Gyrus brain
45 chr1:176169800-176173800 Weak transcription Brain Hippocampus Middle brain
46 chr1:176169800-176174200 Weak transcription Brain Substantia Nigra brain
47 chr1:176170000-176173000 Weak transcription Liver Liver
48 chr1:176170200-176173000 Weak transcription Primary T cells from cord blood blood
49 chr1:176170400-176171800 Enhancers Primary monocytes fromperipheralblood blood
50 chr1:176170400-176174000 Weak transcription Fetal Intestine Small intestine

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Last update: Aug 31, 2015