Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10798449	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10913150	0.87[ASN][1000 genomes]
rs10913158	0.82[ASN][1000 genomes]
rs12125604	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12126441	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12137387	0.93[EUR][1000 genomes]
rs12140384	0.87[EUR][1000 genomes]
rs12143236	0.84[EUR][1000 genomes]
rs12407844	0.83[EUR][1000 genomes]
rs16849645	0.95[ASN][1000 genomes]
rs16849697	1.00[ASN][1000 genomes]
rs16849763	0.85[ASN][1000 genomes]
rs2136545	1.00[ASN][1000 genomes]
rs2502847	0.82[ASN][1000 genomes]
rs41378151	0.84[EUR][1000 genomes]
rs4650938	1.00[ASN][1000 genomes]
rs471534	0.85[ASN][1000 genomes]
rs533403	0.87[ASN][1000 genomes]
rs553852	0.82[ASN][1000 genomes]
rs56367284	0.82[ASN][1000 genomes]
rs580978	0.87[ASN][1000 genomes]
rs58715931	0.83[EUR][1000 genomes]
rs59276566	1.00[ASN][1000 genomes]
rs60617532	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs611883	0.82[ASN][1000 genomes]
rs61821029	0.82[ASN][1000 genomes]
rs61821081	0.83[EUR][1000 genomes]
rs704827	0.82[ASN][1000 genomes]
rs704832	0.92[ASN][1000 genomes]
rs791744	0.85[ASN][1000 genomes]
rs791795	0.81[ASN][1000 genomes]
rs791800	0.87[ASN][1000 genomes]
rs791801	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823794	chr1:175869554-176311778	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv525586	chr1:176224746-176277052	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:176231000-176231400	Active TSS	iPS-15b Cell Line	embryonic stem cell
2	chr1:176231000-176231800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
3	chr1:176231000-176232000	Active TSS	ES-I3 Cell Line	embryonic stem cell

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