Variant report

Variant	rs59276566
Chromosome Location	chr1:176193533-176193534
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:176175264..176176910-chr1:176192478..176194132,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236021	Chromatin interaction
ENSG00000143207	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10158829	1.00[EUR][1000 genomes]
rs10798449	1.00[ASN][1000 genomes]
rs10913150	0.87[ASN][1000 genomes]
rs10913158	0.82[ASN][1000 genomes]
rs11801582	1.00[ASN][1000 genomes]
rs11804926	1.00[EUR][1000 genomes]
rs11806468	1.00[EUR][1000 genomes]
rs11809136	1.00[EUR][1000 genomes]
rs11809835	1.00[EUR][1000 genomes]
rs12239888	1.00[EUR][1000 genomes]
rs13328721	1.00[EUR][1000 genomes]
rs16849522	1.00[EUR][1000 genomes]
rs16849645	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16849697	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16849763	0.85[ASN][1000 genomes]
rs16849829	1.00[EUR][1000 genomes]
rs2136545	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2502847	0.82[ASN][1000 genomes]
rs3845368	1.00[EUR][1000 genomes]
rs4650936	1.00[EUR][1000 genomes]
rs4650938	1.00[ASN][1000 genomes]
rs4652144	1.00[EUR][1000 genomes]
rs4652145	1.00[EUR][1000 genomes]
rs4652148	1.00[EUR][1000 genomes]
rs4652150	1.00[EUR][1000 genomes]
rs4652151	1.00[EUR][1000 genomes]
rs4652152	1.00[EUR][1000 genomes]
rs4652154	1.00[EUR][1000 genomes]
rs4652155	1.00[EUR][1000 genomes]
rs4652170	1.00[EUR][1000 genomes]
rs4652174	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4652176	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs471534	0.85[ASN][1000 genomes]
rs533403	0.87[ASN][1000 genomes]
rs553852	0.82[ASN][1000 genomes]
rs55826684	1.00[EUR][1000 genomes]
rs55969691	1.00[EUR][1000 genomes]
rs55979360	1.00[EUR][1000 genomes]
rs56367284	0.82[ASN][1000 genomes]
rs56981673	1.00[EUR][1000 genomes]
rs580978	0.87[ASN][1000 genomes]
rs58178699	1.00[EUR][1000 genomes]
rs58305404	1.00[EUR][1000 genomes]
rs58408024	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58743849	1.00[EUR][1000 genomes]
rs59373738	1.00[EUR][1000 genomes]
rs611883	0.82[ASN][1000 genomes]
rs61451700	1.00[EUR][1000 genomes]
rs61821029	0.82[ASN][1000 genomes]
rs704827	0.82[ASN][1000 genomes]
rs704832	0.92[ASN][1000 genomes]
rs73040940	1.00[EUR][1000 genomes]
rs73040951	1.00[EUR][1000 genomes]
rs73042718	1.00[EUR][1000 genomes]
rs73042723	1.00[EUR][1000 genomes]
rs73042728	1.00[EUR][1000 genomes]
rs73042741	1.00[EUR][1000 genomes]
rs73042749	1.00[EUR][1000 genomes]
rs73042795	1.00[EUR][1000 genomes]
rs73042800	1.00[EUR][1000 genomes]
rs74127189	1.00[EUR][1000 genomes]
rs74127190	1.00[EUR][1000 genomes]
rs74129027	1.00[EUR][1000 genomes]
rs74129030	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74129032	1.00[EUR][1000 genomes]
rs74129041	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7521561	1.00[EUR][1000 genomes]
rs7543882	1.00[EUR][1000 genomes]
rs791744	0.85[ASN][1000 genomes]
rs791795	0.81[ASN][1000 genomes]
rs791800	0.87[ASN][1000 genomes]
rs791801	0.83[ASN][1000 genomes]
rs9792842	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823794	chr1:175869554-176311778	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:176177600-176198600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr1:176178200-176193800	Weak transcription	Pancreas	Pancrea
3	chr1:176186000-176221400	Weak transcription	Brain Angular Gyrus	brain
4	chr1:176187200-176193600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:176193200-176194000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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