Variant report

Variant	rs4652176
Chromosome Location	chr1:176415841-176415842
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10913158	0.82[ASN][1000 genomes]
rs13328721	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16849645	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849697	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16849763	0.80[ASN][1000 genomes]
rs16849829	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2136545	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4652154	1.00[EUR][1000 genomes]
rs4652155	1.00[EUR][1000 genomes]
rs4652170	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4652174	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55826684	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58408024	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59276566	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74129027	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74129030	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74129032	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74129041	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831970	chr1:176386162-176569207	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1004658	chr1:176412174-176460420	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:176415600-176416200	Enhancers	Brain Substantia Nigra	brain
2	chr1:176415800-176417200	Weak transcription	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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